Factsheet for Solyc03g071820.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g111900.2.1
Solyc02g078550.2.1
Solyc04g082460.2.1
Solyc12g009110.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G49250.1	Solyc04g082460.2.1	AT1G20630.1	21798944
AT3G49250.1	Solyc02g078550.2.1	AT4G21670.1	18541146
AT3G49250.1	Solyc01g111900.2.1	AT4G35160.1	21798944
AT3G49250.1	Solyc12g009110.1.1	AT4G35160.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g071800.1.1	Tomato	cytosol	51.32	48.15
Solyc11g032160.1.1	Tomato	endoplasmic reticulum, extracellular	35.53	38.57
Solyc03g071790.1.1	Tomato	cytosol	50.0	32.62
Solyc11g032150.1.1	Tomato	cytosol, extracellular, nucleus	13.16	27.78
Solyc03g083210.2.1	Tomato	cytosol, nucleus	75.0	26.09
GSMUA_Achr10P...	Banana	cytosol	55.26	24.63
Zm00001d053353_P001	Maize	cytosol	40.13	22.85
Zm00001d013511_P001	Maize	cytosol	41.45	21.88
Bra019588.1-P	Field mustard	cytosol	53.29	21.04
Solyc06g051990.2.1	Tomato	cytosol	64.47	20.98
VIT_16s0098g01820.t01	Wine grape	cytosol	57.89	20.42
KRH53504	Soybean	plastid	53.95	20.1
CDY00194	Canola	cytosol	53.29	20.05
KRH64437	Soybean	cytosol, nucleus	55.92	19.5
CDX86984	Canola	cytosol	51.32	19.4
Os01t0235200-02	Rice	cytosol	52.63	19.14
KXG31464	Sorghum	cytosol	50.66	19.01
AT3G49250.1	Thale cress	cytosol	51.32	18.57
CDY08119	Canola	cytosol, plastid	49.34	17.77
CDY05915	Canola	cytosol	48.68	17.62
Bra017998.1-P	Field mustard	cytosol	50.0	17.59
TraesCS3A01G158200.1	Wheat	cytosol	51.32	17.11
TraesCS3B01G185200.1	Wheat	cytosol	51.32	17.11
TraesCS3D01G165900.1	Wheat	cytosol	51.32	17.11
HORVU3Hr1G057390.1	Barley	cytosol	52.63	16.7
Zm00001d050870_P001	Maize	cytosol	21.71	16.42
Solyc03g083170.2.1	Tomato	cytosol	74.34	14.52
Solyc03g083130.1.1	Tomato	cytosol	40.13	4.63

Protein Annotations

EnsemblPlants:Solyc03g071820.1.1	EnsemblPlantsGene:Solyc03g071820.1	PANTHER:PTHR33566	PANTHER:PTHR33566:SF1	UniParc:UPI0002767BE2	UniProt:K4BHL1
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr3:-:18845512..18847050

Molecular Weight (calculated)

17204.1 Da

IEP (calculated)

7.129

GRAVY (calculated)

-0.022

Length

152 amino acids

Sequence
(BLAST)

001: MKDIIGIIAL LGKVDEDNFT RELSDYLGQK TMLAVVCKTR GGLKVVETYD KEGLISKVLV FMELVGSSIG RPLDERYLVI CLEKLRPYNG EFIAGDPQRR
101: LSIKKQSYLN EETPPGFLGF AINMINIDPV NLYCVTSTCH GQRETLFYRL FS

Best Arabidopsis Sequence Match ( AT5G24275.4 )
(BLAST)

001: MGLNQKVNSC GCIDLSGILQ VTAGYGKTIS LSVMSGIDEI FKKESQTERR ELMLLTKLPE CCVAGSNLTN LIFKVTDSDG VMDTSIHHDE KSGCFHTMSI
101: ETDSSSDESE IRYAFVHGSC KVPTLSLPER EGVFSFKVFH SRFPELHLSL KIQLTPAQIL QRDETSYSRM GLTPKSKMAS TTYSPALSSQ TGPSLRDVAQ
201: FTESFKENLI GYSEHRVEID ERLHCLEAEQ NQAKEELRTL QASLEPLGAM FPECLSTKES MMKQIEEKHH DTAASVFCCL YRKSPPPQSL FLSKKGVFGL
301: VALLGSVAST SLSRVLSEYL GEDMLLALVC KSAQIGPNNA EFLRLQSNHR FHVLCLDAIR PWKDGLLEND PQKKLAMDDP KLPDGDPIPG FKGYAVNMID
401: LAPEELTVQT YSGYGLRETL FYNLFGNLQV

Arabidopsis Description

En/Spm-like transposon [Source:UniProtKB/TrEMBL;Acc:A0A1P8BDF3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.