CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67865
CDX72521
CDX72522
CDX76316
CDX76438
CDX79083
CDX89132
CDX94046
CDX98696
CDY01363
CDY17034
CDY17512
CDY17514
CDY23649
CDY25077
CDY29518
CDY31421
CDY31490
CDY31877
CDY43950
CDY47592
CDY67628
CDY67664
CDY67665

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G49250.1	CDY01363	AT1G20630.1	21798944
AT3G49250.1	CDY29518	AT1G20630.1	21798944
AT3G49250.1	CDY31490	AT1G20630.1	21798944
AT3G49250.1	CDY31877	AT1G20630.1	21798944
AT3G49250.1	CDY17034	AT1G47260.1	21798944
AT3G49250.1	CDY23649	AT1G47260.1	21798944
AT3G49250.1	CDY47592	AT1G47260.1	21798944
AT3G49250.1	CDY67628	AT1G47260.1	21798944
AT3G49250.1	CDX67865	AT3G61790.1	21798944
AT3G49250.1	CDX89132	AT3G61790.1	21798944
AT3G49250.1	CDY25077	AT3G61790.1	21798944
AT3G49250.1	CDY43950	AT3G61790.1	21798944
AT3G49250.1	CDX76438	AT4G21670.1	18541146
AT3G49250.1	CDX79083	AT4G21670.1	18541146
AT3G49250.1	CDX94046	AT4G21670.1	18541146
AT3G49250.1	CDX98696	AT4G21670.1	18541146
AT3G49250.1	CDY31421	AT4G21670.1	18541146
AT3G49250.1	CDX72521	AT4G35160.1	21798944
AT3G49250.1	CDX72522	AT4G35160.1	21798944
AT3G49250.1	CDX76316	AT4G35160.1	21798944
AT3G49250.1	CDY17512	AT4G35160.1	21798944
AT3G49250.1	CDY17514	AT4G35160.1	21798944
AT3G49250.1	CDY67664	AT4G35160.1	21798944
AT3G49250.1	CDY67665	AT4G35160.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY00194	Canola	cytosol	95.52	95.05
AT3G49250.1	Thale cress	cytosol	74.13	70.95
CDY05915	Canola	cytosol	73.13	70.0
CDY08119	Canola	cytosol, plastid	73.13	69.67
Solyc03g071800.1.1	Tomato	cytosol	22.14	54.94
Solyc11g032150.1.1	Tomato	cytosol, extracellular, nucleus	9.45	52.78
Solyc03g071820.1.1	Tomato	cytosol	19.4	51.32
Solyc03g071790.1.1	Tomato	cytosol	27.36	47.21
GSMUA_Achr10P...	Banana	cytosol	39.55	46.63
VIT_16s0098g01820.t01	Wine grape	cytosol	49.25	45.94
KRH64437	Soybean	cytosol, nucleus	48.26	44.5
Zm00001d053353_P001	Maize	cytosol	27.86	41.95
Zm00001d013511_P001	Maize	cytosol	29.35	40.97
KXG31464	Sorghum	cytosol	40.3	40.0
Solyc11g032160.1.1	Tomato	endoplasmic reticulum, extracellular	13.93	40.0
Solyc03g083210.2.1	Tomato	cytosol, nucleus	43.28	39.82
Solyc06g051990.2.1	Tomato	cytosol	44.03	37.9
Os01t0235200-02	Rice	cytosol	39.05	37.56
KRH53504	Soybean	plastid	38.06	37.5
TraesCS3B01G185200.1	Wheat	cytosol	39.8	35.09
TraesCS3A01G158200.1	Wheat	cytosol	39.55	34.87
TraesCS3D01G165900.1	Wheat	cytosol	39.55	34.87
HORVU3Hr1G057390.1	Barley	cytosol	39.3	32.99
Zm00001d050870_P001	Maize	cytosol	14.93	29.85
Solyc03g083170.2.1	Tomato	cytosol	42.79	22.11
CDX80426	Canola	cytosol	26.37	6.68
CDX88088	Canola	cytosol	25.87	6.47
CDX88084	Canola	cytosol	22.64	5.78
CDX80422	Canola	cytosol	22.39	5.74

Protein Annotations

MapMan:12.5.1.14.2	GO:A0A078DF36	EnsemblPlants:CDX86984	ProteinID:CDX86984	ProteinID:CDX86984.1	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005694	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
GO:GO:0051276	EnsemblPlantsGene:GSBRNA2T00145820001	PANTHER:PTHR33566	PANTHER:PTHR33566:SF1	InterPro:SMC_hinge_sf	SUPFAM:SSF75553
UniParc:UPI0004EDD8E9	SEG:seg	:	:	:	:

Description

BnaC03g52540D

Coordinates

chrLK031848:+:1144195..1146673

Molecular Weight (calculated)

44315.1 Da

IEP (calculated)

8.783

GRAVY (calculated)

-0.381

Length

402 amino acids

Sequence
(BLAST)

001: MYPTGQQISF RAAVQDPLMV DPKETTQNGG GISQAEFALF TSNRIQSDLE AMGIKLKLHE DNLKFLKAQK TKLDESILDL QVHMNKLNPS GPPRSENCDA
101: NLQGEDINEQ ILRHANSAAG VLAHVQSRHS SQMTLTKGVV GVVAKLGKVH DENLSQVLSV YLGTRSMLAL VCKDYDSVKG LESYDSQGNV DRNAGLHGLA
201: SSIGRTIEGH FDAISLENLR PYVGQYIAGD PQRRLNLLKP KLPNGEYPPG FLGFAVNMIQ IDPAYLLCVT AYGHGLRETL FYSLFSRLQV YKKRGDMISA
301: LPCISEGAVS LDGGIVRTGG ILTLGSSDEV KVRFAKPSAS RAMDNHSEAE RQMKELKQKK EKTLEDIKRT QVLRDHAVYN FGKKKDEFVR FLAQSSSTSM
401: SQ

Best Arabidopsis Sequence Match ( AT3G49250.1 )
(BLAST)

001: MYPTGQQISF QTTPLNVQDP TRMMNLDQSS PVARNETQNG GGIAHAEFAM FNSKRLESDL EAMGNKIKQH EDNLKFLKSQ KNKMDEAIVD LQVHMSKLNS
101: SPTPRSENSD NSLQGEDINA QILRHENSAA GVLSLVETLH GAQASQLMLT KGVVGVVAKL GKVNDENLSQ ILSNYLGTRS MLAVVCRNYE SVTALEAYDN
201: HGNIDINAGL HCLGSSIGRE IGDSFDAICL ENLRPYVGQH IADDLQRRLD LLKPKLPNGE CPPGFLGFAV NMIQIDPAYL LCVTSYGYGL RETLFYNLFS
301: RLQVYKTRAD MISALPCISD GAVSLDGGII RKTGIFNLGN RDEVNVRFAK PTASRTMDNY SEAEKKMKEL KWKKEKTLED IKREQVLREH AVFNFGKKKE
401: EFVRCLAQSS CTNQPMNTPR

Arabidopsis Description

DMS3IDN1 [Source:UniProtKB/TrEMBL;Acc:A0A178VBM0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.