Factsheet for Solyc06g051990.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g111900.2.1
Solyc02g078550.2.1
Solyc04g082460.2.1
Solyc12g009110.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G49250.1	Solyc04g082460.2.1	AT1G20630.1	21798944
AT3G49250.1	Solyc02g078550.2.1	AT4G21670.1	18541146
AT3G49250.1	Solyc01g111900.2.1	AT4G35160.1	21798944
AT3G49250.1	Solyc12g009110.1.1	AT4G35160.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g071800.1.1	Tomato	cytosol	23.34	67.28
Solyc03g071820.1.1	Tomato	cytosol	20.98	64.47
Solyc03g083210.2.1	Tomato	cytosol, nucleus	53.96	57.67
Solyc03g071790.1.1	Tomato	cytosol	28.69	57.51
Solyc11g032150.1.1	Tomato	cytosol, extracellular, nucleus	8.14	52.78
GSMUA_Achr10P...	Banana	cytosol	38.33	52.49
VIT_16s0098g01820.t01	Wine grape	cytosol	47.54	51.51
KRH64437	Soybean	cytosol, nucleus	46.04	49.31
Solyc11g032160.1.1	Tomato	endoplasmic reticulum, extracellular	14.56	48.57
Bra019588.1-P	Field mustard	cytosol	38.12	46.23
AT3G49250.1	Thale cress	cytosol	40.9	45.48
CDY00194	Canola	cytosol	38.33	44.31
CDX86984	Canola	cytosol	37.9	44.03
Zm00001d053353_P001	Maize	cytosol	24.84	43.45
KRH53504	Soybean	plastid	37.47	42.89
Zm00001d013511_P001	Maize	cytosol	26.12	42.36
CDY05915	Canola	cytosol	37.9	42.14
KXG31464	Sorghum	cytosol	36.19	41.73
CDY08119	Canola	cytosol, plastid	37.47	41.47
Bra017998.1-P	Field mustard	cytosol	37.47	40.51
Os01t0235200-02	Rice	cytosol	35.97	40.19
TraesCS3A01G158200.1	Wheat	cytosol	36.4	37.28
TraesCS3B01G185200.1	Wheat	cytosol	36.19	37.06
TraesCS3D01G165900.1	Wheat	cytosol	35.97	36.84
Zm00001d050870_P001	Maize	cytosol	15.63	36.32
HORVU3Hr1G057390.1	Barley	cytosol	37.05	36.12
Solyc03g083170.2.1	Tomato	cytosol	50.32	30.21
Solyc03g083130.1.1	Tomato	cytosol	24.63	8.73

Protein Annotations

EnsemblPlants:Solyc06g051990.2.1	EnsemblPlantsGene:Solyc06g051990.2	PANTHER:PTHR33566	PANTHER:PTHR33566:SF1	UniParc:UPI0002767292	UniProt:K4C5Y5
MapMan:12.5.1.14.2	:	:	:	:	:

Description

No Description!

Coordinates

chr6:-:35659173..35666214

Molecular Weight (calculated)

52571.0 Da

IEP (calculated)

6.354

GRAVY (calculated)

-0.398

Length

467 amino acids

Sequence
(BLAST)

001: MPMNDDRMKL PINANPVDVH DPLRFNQGGQ ADPYSFARDT MQNEAAEAAV YNTKKLEDAV HEMGLQLKHH EENIIFLKAH KNRLDNSILD MQVALGKYQT
101: ASESGSENEE LSHVQSEEET LGNIFLHEKS AAGIWYELKC HHGTQASHLP LMKDVVGIVA MLGSVDDDNL SRLLSDYLGL ETMLAIVCKT FDGMKALETY
201: DEKGHINKSL GLHGLGASIG KPLDGRFLVI CLEKLRPYAE DFIADDPQRR LDILKPRLPN GDSPPGFLGF AVNMVNIDSV DLYCATSTGY GLRETLFYNL
301: FSRLHVYKTR EDMLQSLPCI RHGAISLDGG MIKHSGVFSL GKREINVKFP KSSRGSNLPQ NYFEIGREIK EMKWKKERTV EDMQREQVLL ERARFNFDLK
401: KQGYMMFLAQ SSTYATQMNA VELKAGGGAR SMIDGNLRAF WVLNKKEEAL SVINPAPTQS ENIVFQY

Best Arabidopsis Sequence Match ( AT3G49250.1 )
(BLAST)

001: MYPTGQQISF QTTPLNVQDP TRMMNLDQSS PVARNETQNG GGIAHAEFAM FNSKRLESDL EAMGNKIKQH EDNLKFLKSQ KNKMDEAIVD LQVHMSKLNS
101: SPTPRSENSD NSLQGEDINA QILRHENSAA GVLSLVETLH GAQASQLMLT KGVVGVVAKL GKVNDENLSQ ILSNYLGTRS MLAVVCRNYE SVTALEAYDN
201: HGNIDINAGL HCLGSSIGRE IGDSFDAICL ENLRPYVGQH IADDLQRRLD LLKPKLPNGE CPPGFLGFAV NMIQIDPAYL LCVTSYGYGL RETLFYNLFS
301: RLQVYKTRAD MISALPCISD GAVSLDGGII RKTGIFNLGN RDEVNVRFAK PTASRTMDNY SEAEKKMKEL KWKKEKTLED IKREQVLREH AVFNFGKKKE
401: EFVRCLAQSS CTNQPMNTPR

Arabidopsis Description

DMS3IDN1 [Source:UniProtKB/TrEMBL;Acc:A0A178VBM0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.