Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019588.1-P | Field mustard | cytosol | 68.81 | 75.06 |
| CDY00194 | Canola | cytosol | 71.43 | 74.26 |
| CDX86984 | Canola | cytosol | 70.95 | 74.13 |
| CDY05915 | Canola | cytosol | 71.67 | 71.67 |
| CDY08119 | Canola | cytosol, plastid | 70.95 | 70.62 |
| Bra017998.1-P | Field mustard | cytosol | 70.24 | 68.29 |
| Solyc03g071800.1.1 | Tomato | cytosol | 22.14 | 57.41 |
| Solyc11g032150.1.1 | Tomato | cytosol, extracellular, nucleus | 9.52 | 55.56 |
| VIT_16s0098g01820.t01 | Wine grape | cytosol | 53.33 | 51.97 |
| Solyc03g071820.1.1 | Tomato | cytosol | 18.57 | 51.32 |
| Solyc03g071790.1.1 | Tomato | cytosol | 27.38 | 49.36 |
| KRH64437 | Soybean | cytosol, nucleus | 50.24 | 48.39 |
| GSMUA_Achr10P... | Banana | cytosol | 38.81 | 47.8 |
| Solyc03g083210.2.1 | Tomato | cytosol, nucleus | 45.24 | 43.48 |
| KRH53504 | Soybean | plastid | 41.19 | 42.4 |
| Zm00001d053353_P001 | Maize | cytosol | 26.67 | 41.95 |
| Solyc06g051990.2.1 | Tomato | cytosol | 45.48 | 40.9 |
| KXG31464 | Sorghum | cytosol | 39.05 | 40.49 |
| Solyc11g032160.1.1 | Tomato | endoplasmic reticulum, extracellular | 13.33 | 40.0 |
| Zm00001d013511_P001 | Maize | cytosol | 27.14 | 39.58 |
| Os01t0235200-02 | Rice | cytosol | 38.81 | 39.0 |
| TraesCS3B01G185200.1 | Wheat | cytosol | 38.57 | 35.53 |
| TraesCS3D01G165900.1 | Wheat | cytosol | 38.33 | 35.31 |
| TraesCS3A01G158200.1 | Wheat | cytosol | 38.1 | 35.09 |
| HORVU3Hr1G057390.1 | Barley | cytosol | 38.1 | 33.4 |
| Zm00001d050870_P001 | Maize | cytosol | 14.29 | 29.85 |
| Solyc03g083170.2.1 | Tomato | cytosol | 42.62 | 23.01 |
| AT5G24275.1 | Thale cress | cytosol | 18.1 | 9.42 |
| AT5G24280.1 | Thale cress | nucleus, plasma membrane, plastid | 24.52 | 6.45 |
Protein Annotations
| MapMan:12.5.1.14.2 | EntrezGene:824086 | UniProt:A0A178VBM0 | ProteinID:AEE78515.1 | ArrayExpress:AT3G49250 | EnsemblPlantsGene:AT3G49250 |
| RefSeq:AT3G49250 | TAIR:AT3G49250 | RefSeq:AT3G49250-TAIR-G | EnsemblPlants:AT3G49250.1 | TAIR:AT3G49250.1 | EMBL:AY049288 |
| EMBL:AY090286 | ProteinID:CAB66404.1 | ncoils:Coil | Symbol:DMS3 | GO:GO:0000419 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006306 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0031047 | GO:GO:0040029 | GO:GO:0042803 | GO:GO:0070921 |
| GO:GO:0080188 | RefSeq:NP_566916.1 | ProteinID:OAP02353.1 | PO:PO:0000013 | PO:PO:0000025 | PO:PO:0000037 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0025022 | PANTHER:PTHR33566 |
| PANTHER:PTHR33566:SF1 | UniProt:Q94A79 | UniParc:UPI000009D9D5 | SEG:seg | : | : |
Description
DMS3IDN1 [Source:UniProtKB/TrEMBL;Acc:A0A178VBM0]
Coordinates
chr3:-:18255960..18260998
Molecular Weight (calculated)
46769.9 Da
IEP (calculated)
7.223
GRAVY (calculated)
-0.433
Length
420 amino acids
Sequence
(BLAST)
(BLAST)
001: MYPTGQQISF QTTPLNVQDP TRMMNLDQSS PVARNETQNG GGIAHAEFAM FNSKRLESDL EAMGNKIKQH EDNLKFLKSQ KNKMDEAIVD LQVHMSKLNS
101: SPTPRSENSD NSLQGEDINA QILRHENSAA GVLSLVETLH GAQASQLMLT KGVVGVVAKL GKVNDENLSQ ILSNYLGTRS MLAVVCRNYE SVTALEAYDN
201: HGNIDINAGL HCLGSSIGRE IGDSFDAICL ENLRPYVGQH IADDLQRRLD LLKPKLPNGE CPPGFLGFAV NMIQIDPAYL LCVTSYGYGL RETLFYNLFS
301: RLQVYKTRAD MISALPCISD GAVSLDGGII RKTGIFNLGN RDEVNVRFAK PTASRTMDNY SEAEKKMKEL KWKKEKTLED IKREQVLREH AVFNFGKKKE
401: EFVRCLAQSS CTNQPMNTPR
101: SPTPRSENSD NSLQGEDINA QILRHENSAA GVLSLVETLH GAQASQLMLT KGVVGVVAKL GKVNDENLSQ ILSNYLGTRS MLAVVCRNYE SVTALEAYDN
201: HGNIDINAGL HCLGSSIGRE IGDSFDAICL ENLRPYVGQH IADDLQRRLD LLKPKLPNGE CPPGFLGFAV NMIQIDPAYL LCVTSYGYGL RETLFYNLFS
301: RLQVYKTRAD MISALPCISD GAVSLDGGII RKTGIFNLGN RDEVNVRFAK PTASRTMDNY SEAEKKMKEL KWKKEKTLED IKREQVLREH AVFNFGKKKE
401: EFVRCLAQSS CTNQPMNTPR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.