Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- peroxisome 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc01g111900.2.1 | |
| Solyc02g078550.2.1 | |
| Solyc04g082460.2.1 | |
| Solyc12g009110.1.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g071790.1.1 | Tomato | cytosol | 24.29 | 81.12 |
| Solyc03g071800.1.1 | Tomato | cytosol | 16.45 | 79.01 |
| Solyc03g071820.1.1 | Tomato | cytosol | 14.52 | 74.34 |
| Solyc03g083210.2.1 | Tomato | cytosol, nucleus | 37.4 | 66.59 |
| Solyc11g032150.1.1 | Tomato | cytosol, extracellular, nucleus | 6.04 | 65.28 |
| GSMUA_Achr10P... | Banana | cytosol | 22.75 | 51.91 |
| Solyc11g032160.1.1 | Tomato | endoplasmic reticulum, extracellular | 9.25 | 51.43 |
| Solyc06g051990.2.1 | Tomato | cytosol | 30.21 | 50.32 |
| VIT_16s0098g01820.t01 | Wine grape | cytosol | 26.22 | 47.33 |
| Bra019588.1-P | Field mustard | cytosol | 22.62 | 45.71 |
| CDY00194 | Canola | cytosol | 22.75 | 43.81 |
| KRH64437 | Soybean | cytosol, nucleus | 24.55 | 43.81 |
| CDX86984 | Canola | cytosol | 22.11 | 42.79 |
| AT3G49250.1 | Thale cress | cytosol | 23.01 | 42.62 |
| CDY08119 | Canola | cytosol, plastid | 22.36 | 41.23 |
| CDY05915 | Canola | cytosol | 22.24 | 41.19 |
| Zm00001d013511_P001 | Maize | cytosol | 15.17 | 40.97 |
| Zm00001d053353_P001 | Maize | cytosol | 14.01 | 40.82 |
| KXG31464 | Sorghum | cytosol | 21.21 | 40.74 |
| KRH53504 | Soybean | plastid | 21.34 | 40.69 |
| Os01t0235200-02 | Rice | cytosol | 21.21 | 39.47 |
| Bra017998.1-P | Field mustard | cytosol | 21.85 | 39.35 |
| TraesCS3B01G185200.1 | Wheat | cytosol | 22.11 | 37.72 |
| TraesCS3A01G158200.1 | Wheat | cytosol | 21.85 | 37.28 |
| TraesCS3D01G165900.1 | Wheat | cytosol | 21.85 | 37.28 |
| HORVU3Hr1G057390.1 | Barley | cytosol | 22.62 | 36.74 |
| Zm00001d050870_P001 | Maize | cytosol | 8.74 | 33.83 |
| Solyc03g083130.1.1 | Tomato | cytosol | 15.3 | 9.04 |
Protein Annotations
| EnsemblPlants:Solyc03g083170.2.1 | EnsemblPlantsGene:Solyc03g083170.2 | ncoils:Coil | SEG:seg | UniParc:UPI0002768932 | UniProt:K4BI93 |
| MapMan:12.5.1.14.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr3:+:53002380..53010313
Molecular Weight (calculated)
87074.8 Da
IEP (calculated)
5.442
GRAVY (calculated)
-0.291
Length
778 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDEQQRMSI DNEKVQKLGD DICRYGLCIR QCDANVVSLK IKQSNIELEM SNLGAWNGLD SFHDLVYDKD VILEKIEGKA DSAAAVIYKL LRSPKPEQLY
101: LKYAHDILGV VALLGEVQTH KLSSMLSTYL GEDQMLAVVC KSRAATRALE INQMDGNVNC ASVLDILAAK LGISIKGQYM VICLEDIRPY KQGVSSDPQR
201: ELAIPQPTLS NRETPPGFLG YAVNMIFLPE EYLQFRTASG YGLRDTLFYH LLGKLQVYKS NEHLYMASSC IEDGAVSLDG GMMRGNGIVS ASVGSEDPYI
301: LFPIICLERQ LLLSPEKVER LKRIEELKLE QNQLQDRIQE ELRNEAKYKK KLAKKLMDKK QIDDQFEDAL LRIVPEAPLM HDPSLNQGGQ TSSITFAGNR
401: DIIQNRTAEA VSCHSKVKLE DAIEETGLQI KHHDDNIKFL EGQKNRLDDS ILDLEAALAK TYSASGTGSE NKESSNGQNE EETIEQILSF DKSAAAICVQ
501: LQKRTGAQIT NIPFMKDIVG IVALLGKVDD DNLSRTLSDY LGQGTMLAIV CKTLDGLKAL ETYDKEGLII KSSGLHGVGA SIGRPLDDRY LVICLENLRP
601: YTSEFIADDP QRRLSIKKPR YVNGKTLPGF LGFAVNMINI DTDNLYCVTS NGHGLRETLF YGLFSQLQVY KTRADMMQAL PFIAGGAISL DGGIIKSAGI
701: FSLGKREVQI KFPKSCGRSY IPENYFETEI RMKELKWERV RCVEDLEREQ TLLTNAKNNF EIRKEEFVKF LSQSSSHL
101: LKYAHDILGV VALLGEVQTH KLSSMLSTYL GEDQMLAVVC KSRAATRALE INQMDGNVNC ASVLDILAAK LGISIKGQYM VICLEDIRPY KQGVSSDPQR
201: ELAIPQPTLS NRETPPGFLG YAVNMIFLPE EYLQFRTASG YGLRDTLFYH LLGKLQVYKS NEHLYMASSC IEDGAVSLDG GMMRGNGIVS ASVGSEDPYI
301: LFPIICLERQ LLLSPEKVER LKRIEELKLE QNQLQDRIQE ELRNEAKYKK KLAKKLMDKK QIDDQFEDAL LRIVPEAPLM HDPSLNQGGQ TSSITFAGNR
401: DIIQNRTAEA VSCHSKVKLE DAIEETGLQI KHHDDNIKFL EGQKNRLDDS ILDLEAALAK TYSASGTGSE NKESSNGQNE EETIEQILSF DKSAAAICVQ
501: LQKRTGAQIT NIPFMKDIVG IVALLGKVDD DNLSRTLSDY LGQGTMLAIV CKTLDGLKAL ETYDKEGLII KSSGLHGVGA SIGRPLDDRY LVICLENLRP
601: YTSEFIADDP QRRLSIKKPR YVNGKTLPGF LGFAVNMINI DTDNLYCVTS NGHGLRETLF YGLFSQLQVY KTRADMMQAL PFIAGGAISL DGGIIKSAGI
701: FSLGKREVQI KFPKSCGRSY IPENYFETEI RMKELKWERV RCVEDLEREQ TLLTNAKNNF EIRKEEFVKF LSQSSSHL
001: MYPTGQQISF QTTPLNVQDP TRMMNLDQSS PVARNETQNG GGIAHAEFAM FNSKRLESDL EAMGNKIKQH EDNLKFLKSQ KNKMDEAIVD LQVHMSKLNS
101: SPTPRSENSD NSLQGEDINA QILRHENSAA GVLSLVETLH GAQASQLMLT KGVVGVVAKL GKVNDENLSQ ILSNYLGTRS MLAVVCRNYE SVTALEAYDN
201: HGNIDINAGL HCLGSSIGRE IGDSFDAICL ENLRPYVGQH IADDLQRRLD LLKPKLPNGE CPPGFLGFAV NMIQIDPAYL LCVTSYGYGL RETLFYNLFS
301: RLQVYKTRAD MISALPCISD GAVSLDGGII RKTGIFNLGN RDEVNVRFAK PTASRTMDNY SEAEKKMKEL KWKKEKTLED IKREQVLREH AVFNFGKKKE
401: EFVRCLAQSS CTNQPMNTPR
101: SPTPRSENSD NSLQGEDINA QILRHENSAA GVLSLVETLH GAQASQLMLT KGVVGVVAKL GKVNDENLSQ ILSNYLGTRS MLAVVCRNYE SVTALEAYDN
201: HGNIDINAGL HCLGSSIGRE IGDSFDAICL ENLRPYVGQH IADDLQRRLD LLKPKLPNGE CPPGFLGFAV NMIQIDPAYL LCVTSYGYGL RETLFYNLFS
301: RLQVYKTRAD MISALPCISD GAVSLDGGII RKTGIFNLGN RDEVNVRFAK PTASRTMDNY SEAEKKMKEL KWKKEKTLED IKREQVLREH AVFNFGKKKE
401: EFVRCLAQSS CTNQPMNTPR
Arabidopsis Description
DMS3IDN1 [Source:UniProtKB/TrEMBL;Acc:A0A178VBM0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.