Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY08119 | Canola | cytosol, plastid | 92.62 | 92.18 |
| CDX86984 | Canola | cytosol | 70.0 | 73.13 |
| CDY00194 | Canola | cytosol | 69.05 | 71.78 |
| AT3G49250.1 | Thale cress | cytosol | 71.67 | 71.67 |
| Solyc11g032150.1.1 | Tomato | cytosol, extracellular, nucleus | 9.52 | 55.56 |
| Solyc03g071800.1.1 | Tomato | cytosol | 21.19 | 54.94 |
| Solyc03g071820.1.1 | Tomato | cytosol | 17.62 | 48.68 |
| VIT_16s0098g01820.t01 | Wine grape | cytosol | 48.81 | 47.56 |
| GSMUA_Achr10P... | Banana | cytosol | 38.1 | 46.92 |
| Solyc03g071790.1.1 | Tomato | cytosol | 25.95 | 46.78 |
| KRH64437 | Soybean | cytosol, nucleus | 45.71 | 44.04 |
| Zm00001d053353_P001 | Maize | cytosol | 26.43 | 41.57 |
| Zm00001d013511_P001 | Maize | cytosol | 27.86 | 40.62 |
| Solyc03g083210.2.1 | Tomato | cytosol, nucleus | 42.14 | 40.5 |
| KRH53504 | Soybean | plastid | 38.81 | 39.95 |
| KXG31464 | Sorghum | cytosol | 38.1 | 39.51 |
| Os01t0235200-02 | Rice | cytosol | 38.33 | 38.52 |
| Solyc06g051990.2.1 | Tomato | cytosol | 42.14 | 37.9 |
| Solyc11g032160.1.1 | Tomato | endoplasmic reticulum, extracellular | 12.38 | 37.14 |
| TraesCS3B01G185200.1 | Wheat | cytosol | 38.33 | 35.31 |
| TraesCS3A01G158200.1 | Wheat | cytosol | 38.1 | 35.09 |
| TraesCS3D01G165900.1 | Wheat | cytosol | 38.1 | 35.09 |
| HORVU3Hr1G057390.1 | Barley | cytosol | 37.86 | 33.19 |
| Zm00001d050870_P001 | Maize | cytosol | 14.29 | 29.85 |
| Solyc03g083170.2.1 | Tomato | cytosol | 41.19 | 22.24 |
| CDX80426 | Canola | cytosol | 24.29 | 6.43 |
| CDX80422 | Canola | cytosol | 22.86 | 6.12 |
| CDX88084 | Canola | cytosol | 22.86 | 6.1 |
| CDX88088 | Canola | cytosol | 23.33 | 6.1 |
Protein Annotations
| EnsemblPlants:CDY05915 | EnsemblPlantsGene:GSBRNA2T00121721001 | ncoils:Coil | PANTHER:PTHR33566 | PANTHER:PTHR33566:SF1 | ProteinID:CDY05915 |
| ProteinID:CDY05915.1 | SEG:seg | UniParc:UPI0004EDE1E6 | MapMan:12.5.1.14.2 | : | : |
Description
BnaC08g20920D
Coordinates
chrLK031966:-:505024..507348
Molecular Weight (calculated)
46656.7 Da
IEP (calculated)
7.901
GRAVY (calculated)
-0.425
Length
420 amino acids
Sequence
(BLAST)
(BLAST)
001: MYPTGQQMSF QTAPFIVQSP TTMMQLDPKE TSSGGGTQNG GGMSVAEFAL FNSDRLQSDL EVMGNKIKEH EDNLKFLKSQ KNKLDESILK LQVHMGKLHT
101: SGISTIENTN LQGEDINEQI LRQVNSAAGV LSYVQSHHYS QASQLDMTNG VVGVVAKLGR VNDENLSQVL SDYLGTRSML ALVCKDYKSV KPLEKYDNQG
201: NVDRSGAIHG LASSIGRTIE GHFDVICLEN LRPYVGKRID GDPQRRLDLP NPKLPNGEYP PGFLGYAVNL IQIDPAYLLC VTGYGYGLRE TLFYSLFSQL
301: QVYKRRVDMV SALPCITDGA VSLDGGIIRK TGIFILGTRD AAAANVRFSK PSASQTTGNY SEAERQMNEL RWTKEKTLED IKRAQVLRDH ALYNFGKKKE
401: EFVRCLSQSS YTNEQMISPR
101: SGISTIENTN LQGEDINEQI LRQVNSAAGV LSYVQSHHYS QASQLDMTNG VVGVVAKLGR VNDENLSQVL SDYLGTRSML ALVCKDYKSV KPLEKYDNQG
201: NVDRSGAIHG LASSIGRTIE GHFDVICLEN LRPYVGKRID GDPQRRLDLP NPKLPNGEYP PGFLGYAVNL IQIDPAYLLC VTGYGYGLRE TLFYSLFSQL
301: QVYKRRVDMV SALPCITDGA VSLDGGIIRK TGIFILGTRD AAAANVRFSK PSASQTTGNY SEAERQMNEL RWTKEKTLED IKRAQVLRDH ALYNFGKKKE
401: EFVRCLSQSS YTNEQMISPR
001: MYPTGQQISF QTTPLNVQDP TRMMNLDQSS PVARNETQNG GGIAHAEFAM FNSKRLESDL EAMGNKIKQH EDNLKFLKSQ KNKMDEAIVD LQVHMSKLNS
101: SPTPRSENSD NSLQGEDINA QILRHENSAA GVLSLVETLH GAQASQLMLT KGVVGVVAKL GKVNDENLSQ ILSNYLGTRS MLAVVCRNYE SVTALEAYDN
201: HGNIDINAGL HCLGSSIGRE IGDSFDAICL ENLRPYVGQH IADDLQRRLD LLKPKLPNGE CPPGFLGFAV NMIQIDPAYL LCVTSYGYGL RETLFYNLFS
301: RLQVYKTRAD MISALPCISD GAVSLDGGII RKTGIFNLGN RDEVNVRFAK PTASRTMDNY SEAEKKMKEL KWKKEKTLED IKREQVLREH AVFNFGKKKE
401: EFVRCLAQSS CTNQPMNTPR
101: SPTPRSENSD NSLQGEDINA QILRHENSAA GVLSLVETLH GAQASQLMLT KGVVGVVAKL GKVNDENLSQ ILSNYLGTRS MLAVVCRNYE SVTALEAYDN
201: HGNIDINAGL HCLGSSIGRE IGDSFDAICL ENLRPYVGQH IADDLQRRLD LLKPKLPNGE CPPGFLGFAV NMIQIDPAYL LCVTSYGYGL RETLFYNLFS
301: RLQVYKTRAD MISALPCISD GAVSLDGGII RKTGIFNLGN RDEVNVRFAK PTASRTMDNY SEAEKKMKEL KWKKEKTLED IKREQVLREH AVFNFGKKKE
401: EFVRCLAQSS CTNQPMNTPR
Arabidopsis Description
DMS3IDN1 [Source:UniProtKB/TrEMBL;Acc:A0A178VBM0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.