Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009745.1-P | Field mustard | nucleus | 98.88 | 99.37 |
| CDX80426 | Canola | cytosol | 89.36 | 90.54 |
| AT5G24280.1 | Thale cress | nucleus, plasma membrane, plastid | 70.26 | 70.65 |
| CDX80422 | Canola | cytosol | 59.74 | 61.19 |
| CDX88084 | Canola | cytosol | 58.68 | 59.91 |
| CDX86984 | Canola | cytosol | 6.47 | 25.87 |
| CDY00194 | Canola | cytosol | 6.47 | 25.74 |
| CDY08119 | Canola | cytosol, plastid | 6.16 | 23.46 |
| CDY05915 | Canola | cytosol | 6.1 | 23.33 |
Protein Annotations
| EnsemblPlants:CDX88088 | EnsemblPlantsGene:GSBRNA2T00147515001 | Gene3D:3.30.565.10 | InterPro:HATPase_C | InterPro:HATPase_C_sf | InterPro:IPR036890 |
| ncoils:Coil | PANTHER:PTHR33566 | PANTHER:PTHR33566:SF3 | PFAM:PF13589 | ProteinID:CDX88088 | ProteinID:CDX88088.1 |
| SEG:seg | SUPFAM:SSF55874 | UniParc:UPI0004EDDC84 | MapMan:35.1 | : | : |
Description
BnaA06g26790D
Coordinates
chrLK031854:-:526604..537562
Molecular Weight (calculated)
179365.0 Da
IEP (calculated)
6.266
GRAVY (calculated)
-0.355
Length
1607 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSSRRLVRRA LILDEDDEDD VVYSFKVLLP NSTSVPLTVI NPEPEMLMGS FVDLVKEEYE KARKSCLLMT KRTRIDWNLG GKFHLESDGE RMKGMVRFAA
0101: FKPYLCHIIR LDDGSGVCSS MYENLWDLTP DTDLLKELPE NYSFETALAD LIDNSLQAVW SCSPGERRLI SVDVSADRIS VFDTGRGMDS SEENAIVKWG
0201: KIGGSLHRSE KTFAIGGKPP YLKPFFGMFG YGGPYACMFL GRRTLVSSKT KESKKVFTLQ YEKEALIGNH SVSGKHWKTG GGMRDPTEDE NKLSPHGSFT
0301: KVEIFESEFD MSKIYQLQCR LKDIYFPYIQ TCLLLGCDEL SKTGRTERPV EFQVSGEDLA EIAGGEVAIT NLNSKGEEFS FQIRFSLTSE KRKGKPQQAN
0401: ARLKFVYFPI VQGKESIEKI LEGLQEEGCK VSESFETFGR VSIRRLGRLL PEVRWDSIPF MQRGNRASTL LKSCRRVKCF IDLDAGFNPT PSKTDLASQN
0501: PFSVALRNFG SKQTDKEKDT DVKMVIHREG KPLTQLEQNY QDWVMKMHDA HDEEATSGED EAILVLESLD KKALGILRDA VRVHKVVTRN GKLWKRGQNI
0601: KLLKGACGGV HNGNIYATID YFLIEGFEDE AGAGDTRILC RWPIDCPKKE GCKLSCIDGS WRLELKKSLT LPITIIDSGK CLHADADEWT RKLERQQEKA
0701: PSKIDLLDER DCRELNIDGE LPVSVRVGRA PPQQIVAVIR PASFTSVTPS KKLEQKHVVS MEGKEMVMVV KLADPNTKPS AKVATKSVCS QRVFPTSCKG
0801: IGGLYIFSLR SKFPNLFKRA GTYNFSFSIG DSIRCNKTVV VKPSSKAAKW KLDDSLDPLP WNVRVGSCLG PLRIACFDEY ENQIQFTSVP SLEVELKANP
0901: GFQLKIDDFE ANLIDGGSTL MIKEMLVETD ELDKISPSYD ATLEIRAQDT PLCVSTACKV NPGPLKRIEV NNPQAFENLL PGSTVENLIL EMFDGFNNHI
1001: AEGTSVLIKT DGYCVEDWMG DNRKVDGHGC IDLSGILKVT EGYGKHVSFS VVSDCKEIFR KESQIEEREL RLVTELPESC TAGSNLTSLI FKVTDSDGSL
1101: DTSIHHDEKT RCIHTLSVES DSSSVESGIR YAFVHGSCKV PSLSLPETEG IFSFKVFHSR YPELHVNLEI LITPAPTSER DDIGCSTPYS RMTSTPQSGM
1201: ASATPFPGVT PTPSLGLERT PCSQFGVLAI RSPSLDGSCP SGVMDIVQYT QSLKQELSTY EAQREVTDER LKCLEAEQEQ VEQELITFQA SLEPQGVAFP
1301: ECLSTKEQMM KHIEEEHYNT AASVFCSLYR KAPPPKSRFL SNKGGKGEVF GIVALLGSVA STALSRVLSV YLGNDTMLAL VCKSSAYGPT SCAEYLKLQS
1401: ETEYQRLQSE AAKLGRSITN DLLIHCLDAF RPWSSGLMKN DPQRRLAMVN PSLSNGDPIP GFKDYAVNMI ELATGELDIQ TKLGHGLRET LFYGLFGDLH
1501: VYETGRDLEA ALPFISGSDA VSLDGLISKR NGLMHSVCLI PEVHFPVTVT ENHEKTLVKM EITREKKRKR EEEILEERGL LRKIEKKMKK ATKKYERFKA
1601: MADSQDV
0101: FKPYLCHIIR LDDGSGVCSS MYENLWDLTP DTDLLKELPE NYSFETALAD LIDNSLQAVW SCSPGERRLI SVDVSADRIS VFDTGRGMDS SEENAIVKWG
0201: KIGGSLHRSE KTFAIGGKPP YLKPFFGMFG YGGPYACMFL GRRTLVSSKT KESKKVFTLQ YEKEALIGNH SVSGKHWKTG GGMRDPTEDE NKLSPHGSFT
0301: KVEIFESEFD MSKIYQLQCR LKDIYFPYIQ TCLLLGCDEL SKTGRTERPV EFQVSGEDLA EIAGGEVAIT NLNSKGEEFS FQIRFSLTSE KRKGKPQQAN
0401: ARLKFVYFPI VQGKESIEKI LEGLQEEGCK VSESFETFGR VSIRRLGRLL PEVRWDSIPF MQRGNRASTL LKSCRRVKCF IDLDAGFNPT PSKTDLASQN
0501: PFSVALRNFG SKQTDKEKDT DVKMVIHREG KPLTQLEQNY QDWVMKMHDA HDEEATSGED EAILVLESLD KKALGILRDA VRVHKVVTRN GKLWKRGQNI
0601: KLLKGACGGV HNGNIYATID YFLIEGFEDE AGAGDTRILC RWPIDCPKKE GCKLSCIDGS WRLELKKSLT LPITIIDSGK CLHADADEWT RKLERQQEKA
0701: PSKIDLLDER DCRELNIDGE LPVSVRVGRA PPQQIVAVIR PASFTSVTPS KKLEQKHVVS MEGKEMVMVV KLADPNTKPS AKVATKSVCS QRVFPTSCKG
0801: IGGLYIFSLR SKFPNLFKRA GTYNFSFSIG DSIRCNKTVV VKPSSKAAKW KLDDSLDPLP WNVRVGSCLG PLRIACFDEY ENQIQFTSVP SLEVELKANP
0901: GFQLKIDDFE ANLIDGGSTL MIKEMLVETD ELDKISPSYD ATLEIRAQDT PLCVSTACKV NPGPLKRIEV NNPQAFENLL PGSTVENLIL EMFDGFNNHI
1001: AEGTSVLIKT DGYCVEDWMG DNRKVDGHGC IDLSGILKVT EGYGKHVSFS VVSDCKEIFR KESQIEEREL RLVTELPESC TAGSNLTSLI FKVTDSDGSL
1101: DTSIHHDEKT RCIHTLSVES DSSSVESGIR YAFVHGSCKV PSLSLPETEG IFSFKVFHSR YPELHVNLEI LITPAPTSER DDIGCSTPYS RMTSTPQSGM
1201: ASATPFPGVT PTPSLGLERT PCSQFGVLAI RSPSLDGSCP SGVMDIVQYT QSLKQELSTY EAQREVTDER LKCLEAEQEQ VEQELITFQA SLEPQGVAFP
1301: ECLSTKEQMM KHIEEEHYNT AASVFCSLYR KAPPPKSRFL SNKGGKGEVF GIVALLGSVA STALSRVLSV YLGNDTMLAL VCKSSAYGPT SCAEYLKLQS
1401: ETEYQRLQSE AAKLGRSITN DLLIHCLDAF RPWSSGLMKN DPQRRLAMVN PSLSNGDPIP GFKDYAVNMI ELATGELDIQ TKLGHGLRET LFYGLFGDLH
1501: VYETGRDLEA ALPFISGSDA VSLDGLISKR NGLMHSVCLI PEVHFPVTVT ENHEKTLVKM EITREKKRKR EEEILEERGL LRKIEKKMKK ATKKYERFKA
1601: MADSQDV
0001: MSSRRSVKRS LVLDDDDDED IFYNFKVLLP NGTSVKLTLK NPEPEISMQS FVNLVKKEYD NARKDCLLMS KRMKVDWNSG GKFHLESNGG KMKGIVRFAA
0101: FKPDLCHIIR LDDGSGIAST MYENLWDLTP DTDLLKELPE NYSFETALAD LIDNSLQAVW PYREGARKLI SVDISGDHIT VFDTGRGMDS SEGNSIDKWG
0201: KIGASLHRSQ KTGAIGGNPP YLKPYFGMFG YGGPYASMFL GRRTLVSSKT KESKKVFTLQ FKKEALIDNR SIVGKNWKTD GGMRDPSEEE MKLSPHGSFT
0301: KVEIFESEFD ISKIYQLQCR LKDIYFPYIQ CDELSKTGRT ERPVAFQVNG EDLAEIAGGE VAITNLHSKG QFFSFQIRFT LFGGKRKGTA QEANARLKFV
0401: YFPIVQGKES IEKILQSLEE EGCKVSESFQ TFGRVSLRRL GRLLPEVRWD SIPFMQRGNR ASTLQKSCRR VKCFVDLDAG FSPTPSKTDL ASQNPFSVAL
0501: RNFGSKSTEK EKDDDVNIVI HREGKSVSYA HLEEKYQEWV LEMHNTHDEE AASGLDEAVL IVGSLDKKAL GILRDAVRVH KEVRRKEKTW KRGQNIKILR
0601: GAYAGIHNNN VYATIDYFLI EGFEDEAGGD TRILCRPIDR PENEGCKLSI IDGISKLEVQ SSLSLPITII DSGKCLPVDA NEWNRKLDKQ QEKAPSKIDL
0701: LDERDCRELK IDGELPIGNS VRAGKAPPKQ IVAVVRPACF TSLTPSKKLD QKNIVKMDGE EMVMVVKLKS SDKNISSQRL FPTSRKGISG LYIFSLGSKF
0801: PNLFKKAGTY NFSFSIGNSI KCNKTVVVRP SSKAARWELD DNLESLPCNV RVGSSLPPFR IACFDKYKNK IPFTSVPSLE VELEASPGFL IKIDKLETNL
0901: INDGLILKIE NMLVETDELD QIRPNYEATL EIRAMDNPFS VSVPCKVNPG PLKRVAVNNP KALENLLPDS TVEDFILELF DGYNNHVAEG TDVLIHIDGY
1001: RIEDWMGINR KVDSRGCINL SGILKVTEGY GKSVSLSVMS GNEVIFCKES QIDERQLRLV TELPDCCTAG TNLMNLIFQV TELDGSLDTS IHHDEKSGCF
1101: HTMSIESDSS SVESAIRYAF VHGSCKVSSL SLPENEGVFS CRVFHSRYPE LQMSIKIQVT SAPTSEREES GYSTPHSKTT PPPESGIPSI TNPWPTPCSQ
1201: FGVLAIRSSS LALSSETSLM DMAQYTEDLK EKINIDEERR VELEERLKCL QAQREHAEQE CSRLQASLEP LGAPFPECLS TKESMMKQIE EKHHDTAASV
1301: FCCLYRKAPP PRSLFLSQKG MFGVVALLGS VASTSLSRVL SEYLGKDTML SLVCKSSQFG PKSDEYRKFQ SEAASLGRSI TNRFLVICLD ATRPWRNGLV
1401: RNDPQKRLAM DNPYLPNGDP IPGFKGYAVN MIDLASEELD IQSSSGYGLR ETLFYGVFRE LQVYETAEHL EAALPHINGG DAVSLDGVIA RENGFIYSGC
1501: CTPEVHFPIT VTERQEKALV QLEITRDKKR KTEEMMTEEN RSLRRLVKKL KKANEKYQNF TAMADS
0101: FKPDLCHIIR LDDGSGIAST MYENLWDLTP DTDLLKELPE NYSFETALAD LIDNSLQAVW PYREGARKLI SVDISGDHIT VFDTGRGMDS SEGNSIDKWG
0201: KIGASLHRSQ KTGAIGGNPP YLKPYFGMFG YGGPYASMFL GRRTLVSSKT KESKKVFTLQ FKKEALIDNR SIVGKNWKTD GGMRDPSEEE MKLSPHGSFT
0301: KVEIFESEFD ISKIYQLQCR LKDIYFPYIQ CDELSKTGRT ERPVAFQVNG EDLAEIAGGE VAITNLHSKG QFFSFQIRFT LFGGKRKGTA QEANARLKFV
0401: YFPIVQGKES IEKILQSLEE EGCKVSESFQ TFGRVSLRRL GRLLPEVRWD SIPFMQRGNR ASTLQKSCRR VKCFVDLDAG FSPTPSKTDL ASQNPFSVAL
0501: RNFGSKSTEK EKDDDVNIVI HREGKSVSYA HLEEKYQEWV LEMHNTHDEE AASGLDEAVL IVGSLDKKAL GILRDAVRVH KEVRRKEKTW KRGQNIKILR
0601: GAYAGIHNNN VYATIDYFLI EGFEDEAGGD TRILCRPIDR PENEGCKLSI IDGISKLEVQ SSLSLPITII DSGKCLPVDA NEWNRKLDKQ QEKAPSKIDL
0701: LDERDCRELK IDGELPIGNS VRAGKAPPKQ IVAVVRPACF TSLTPSKKLD QKNIVKMDGE EMVMVVKLKS SDKNISSQRL FPTSRKGISG LYIFSLGSKF
0801: PNLFKKAGTY NFSFSIGNSI KCNKTVVVRP SSKAARWELD DNLESLPCNV RVGSSLPPFR IACFDKYKNK IPFTSVPSLE VELEASPGFL IKIDKLETNL
0901: INDGLILKIE NMLVETDELD QIRPNYEATL EIRAMDNPFS VSVPCKVNPG PLKRVAVNNP KALENLLPDS TVEDFILELF DGYNNHVAEG TDVLIHIDGY
1001: RIEDWMGINR KVDSRGCINL SGILKVTEGY GKSVSLSVMS GNEVIFCKES QIDERQLRLV TELPDCCTAG TNLMNLIFQV TELDGSLDTS IHHDEKSGCF
1101: HTMSIESDSS SVESAIRYAF VHGSCKVSSL SLPENEGVFS CRVFHSRYPE LQMSIKIQVT SAPTSEREES GYSTPHSKTT PPPESGIPSI TNPWPTPCSQ
1201: FGVLAIRSSS LALSSETSLM DMAQYTEDLK EKINIDEERR VELEERLKCL QAQREHAEQE CSRLQASLEP LGAPFPECLS TKESMMKQIE EKHHDTAASV
1301: FCCLYRKAPP PRSLFLSQKG MFGVVALLGS VASTSLSRVL SEYLGKDTML SLVCKSSQFG PKSDEYRKFQ SEAASLGRSI TNRFLVICLD ATRPWRNGLV
1401: RNDPQKRLAM DNPYLPNGDP IPGFKGYAVN MIDLASEELD IQSSSGYGLR ETLFYGVFRE LQVYETAEHL EAALPHINGG DAVSLDGVIA RENGFIYSGC
1501: CTPEVHFPIT VTERQEKALV QLEITRDKKR KTEEMMTEEN RSLRRLVKKL KKANEKYQNF TAMADS
Arabidopsis Description
GMI1Structural maintenance of chromosomes flexible hinge domain-containing protein GMI1 [Source:UniProtKB/Swiss-Prot;Acc:F4KFS5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.