CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67865
CDX72521
CDX72522
CDX76316
CDX76438
CDX79083
CDX89132
CDX94046
CDX98696
CDY01363
CDY17034
CDY17512
CDY17514
CDY23649
CDY25077
CDY29518
CDY31421
CDY31490
CDY31877
CDY43950
CDY47592
CDY67628
CDY67664
CDY67665

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G49250.1	CDY01363	AT1G20630.1	21798944
AT3G49250.1	CDY29518	AT1G20630.1	21798944
AT3G49250.1	CDY31490	AT1G20630.1	21798944
AT3G49250.1	CDY31877	AT1G20630.1	21798944
AT3G49250.1	CDY17034	AT1G47260.1	21798944
AT3G49250.1	CDY23649	AT1G47260.1	21798944
AT3G49250.1	CDY47592	AT1G47260.1	21798944
AT3G49250.1	CDY67628	AT1G47260.1	21798944
AT3G49250.1	CDX67865	AT3G61790.1	21798944
AT3G49250.1	CDX89132	AT3G61790.1	21798944
AT3G49250.1	CDY25077	AT3G61790.1	21798944
AT3G49250.1	CDY43950	AT3G61790.1	21798944
AT3G49250.1	CDX76438	AT4G21670.1	18541146
AT3G49250.1	CDX79083	AT4G21670.1	18541146
AT3G49250.1	CDX94046	AT4G21670.1	18541146
AT3G49250.1	CDX98696	AT4G21670.1	18541146
AT3G49250.1	CDY31421	AT4G21670.1	18541146
AT3G49250.1	CDX72521	AT4G35160.1	21798944
AT3G49250.1	CDX72522	AT4G35160.1	21798944
AT3G49250.1	CDX76316	AT4G35160.1	21798944
AT3G49250.1	CDY17512	AT4G35160.1	21798944
AT3G49250.1	CDY17514	AT4G35160.1	21798944
AT3G49250.1	CDY67664	AT4G35160.1	21798944
AT3G49250.1	CDY67665	AT4G35160.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05915	Canola	cytosol	92.18	92.62
Bra017998.1-P	Field mustard	cytosol	89.81	87.73
CDX86984	Canola	cytosol	69.67	73.13
CDY00194	Canola	cytosol	69.19	72.28
AT3G49250.1	Thale cress	cytosol	70.62	70.95
Solyc11g032150.1.1	Tomato	cytosol, extracellular, nucleus	9.72	56.94
Solyc03g071800.1.1	Tomato	cytosol	21.09	54.94
Solyc03g071820.1.1	Tomato	cytosol	17.77	49.34
Solyc03g071790.1.1	Tomato	cytosol	26.3	47.64
GSMUA_Achr10P...	Banana	cytosol	37.91	46.92
VIT_16s0098g01820.t01	Wine grape	cytosol	47.87	46.87
KRH64437	Soybean	cytosol, nucleus	45.97	44.5
Zm00001d013511_P001	Maize	cytosol	28.44	41.67
Zm00001d053353_P001	Maize	cytosol	25.83	40.82
Solyc03g083210.2.1	Tomato	cytosol, nucleus	41.94	40.5
KRH53504	Soybean	plastid	38.86	40.2
KXG31464	Sorghum	cytosol	38.15	39.75
Os01t0235200-02	Rice	cytosol	38.39	38.76
Solyc06g051990.2.1	Tomato	cytosol	41.47	37.47
Solyc11g032160.1.1	Tomato	endoplasmic reticulum, extracellular	12.32	37.14
TraesCS3B01G185200.1	Wheat	cytosol	38.63	35.75
TraesCS3A01G158200.1	Wheat	cytosol	38.39	35.53
TraesCS3D01G165900.1	Wheat	cytosol	38.39	35.53
HORVU3Hr1G057390.1	Barley	cytosol	38.39	33.82
Zm00001d050870_P001	Maize	cytosol	13.74	28.86
Solyc03g083170.2.1	Tomato	cytosol	41.23	22.36
CDX80426	Canola	cytosol	24.41	6.49
CDX88088	Canola	cytosol	23.46	6.16
CDX80422	Canola	cytosol	22.75	6.12
CDX88084	Canola	cytosol	22.75	6.1

Protein Annotations

MapMan:12.5.1.14.2	GO:A0A078F516	UniProt:A0A078F516	EnsemblPlants:CDY08119	ProteinID:CDY08119	ProteinID:CDY08119.1
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005694	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	GO:GO:0051276	EnsemblPlantsGene:GSBRNA2T00125399001	PANTHER:PTHR33566	PANTHER:PTHR33566:SF1	InterPro:SMC_hinge_sf
SUPFAM:SSF75553	UniParc:UPI0004EE2671	SEG:seg	:	:	:

Description

BnaA06g16070DBnaA06g16070D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F516]

Coordinates

chrLK031983:-:467626..469982

Molecular Weight (calculated)

46754.8 Da

IEP (calculated)

7.856

GRAVY (calculated)

-0.410

Length

422 amino acids

Sequence
(BLAST)

001: MHPTGQQMSF QTSPFIVQST TTMMQLDPKE TSSGGGTQNG GGMSQAEFAL FNSDRLQSDL EAMGNKIKEH EDNLKFLKSQ KNKLDESILK LQVHMGKLHT
101: SGTCTIENTN LQGEDINEQI LRQVNSAAGV LSYVQSHHYS EALQLDMTNG VVGVVAKLGK VNDQNLSQAL SDYLGTRSML ALVYKDYKSV KPLEKYDNQG
201: NVDRSGAIHG LASSIGRTIE GQFDVICLEN LRPYVGKRIA GDPQRRLDLP NPKLPNGEYP PGFLGYAVNL IHIDPAYLLC VTAYGYGLRE TLFYSLFSQL
301: QVYKTRVDMI SALPCITDGA VSLDGGIIRK TGIFTLGARD VAAVNVRFAK PSASQTTGSY SEAERQMNEL RWTKEKTLED IKRAQVLRDH ALYNFGKKKE
401: EFVRCLSQSS CPNEMNQPKS IF

Best Arabidopsis Sequence Match ( AT3G49250.1 )
(BLAST)

001: MYPTGQQISF QTTPLNVQDP TRMMNLDQSS PVARNETQNG GGIAHAEFAM FNSKRLESDL EAMGNKIKQH EDNLKFLKSQ KNKMDEAIVD LQVHMSKLNS
101: SPTPRSENSD NSLQGEDINA QILRHENSAA GVLSLVETLH GAQASQLMLT KGVVGVVAKL GKVNDENLSQ ILSNYLGTRS MLAVVCRNYE SVTALEAYDN
201: HGNIDINAGL HCLGSSIGRE IGDSFDAICL ENLRPYVGQH IADDLQRRLD LLKPKLPNGE CPPGFLGFAV NMIQIDPAYL LCVTSYGYGL RETLFYNLFS
301: RLQVYKTRAD MISALPCISD GAVSLDGGII RKTGIFNLGN RDEVNVRFAK PTASRTMDNY SEAEKKMKEL KWKKEKTLED IKREQVLREH AVFNFGKKKE
401: EFVRCLAQSS CTNQPMNTPR

Arabidopsis Description

DMS3IDN1 [Source:UniProtKB/TrEMBL;Acc:A0A178VBM0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.