CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67404
CDX74522
CDX83793
CDX83796
CDX91471
CDX96685
CDX99732
CDY01661
CDY07727
CDY14457
CDY40987
CDY45733
CDY58121
CDY65565
CDY69065

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G61790.1	CDX83793	AT1G19010.1	21798944
AT3G61790.1	CDX83796	AT1G19010.1	21798944
AT3G61790.1	CDX96685	AT1G19010.1	21798944
AT3G61790.1	CDX91471	AT2G38490.1	21798944
AT3G61790.1	CDY07727	AT2G38490.1	21798944
AT3G61790.1	CDY14457	AT2G38490.1	21798944
AT3G61790.1	CDY65565	AT2G38490.1	21798944
AT3G61790.1	CDX99732	AT3G26050.1	21798944
AT3G61790.1	CDY40987	AT3G26050.1	21798944
AT3G61790.1	CDX67404	AT5G38470.1	21798944
AT3G61790.1	CDX74522	AT5G38470.1	21798944
AT3G61790.1	CDY01661	AT5G38470.1	21798944
AT3G61790.1	CDY58121	AT5G38470.1	21798944
AT3G61790.1	CDY45733	AT5G63370.1	21798944
AT3G61790.1	CDY69065	AT5G63370.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67865	Canola	nucleus	99.69	99.69
Bra003473.1-P	Field mustard	nucleus	97.83	99.37
AT3G61790.1	Thale cress	nucleus	96.28	95.4
CDX89132	Canola	cytosol	95.36	94.48
CDY43950	Canola	nucleus	94.43	93.85
VIT_02s0025g01660.t01	Wine grape	cytosol	81.42	83.23
KRG97189	Soybean	nucleus	78.95	81.21
CDX92848	Canola	nucleus	76.16	80.66
GSMUA_Achr5P06970_001	Banana	cytosol	79.57	79.32
CDY14268	Canola	nucleus	77.4	78.12
CDX89221	Canola	nucleus	77.71	77.95
CDY19018	Canola	nucleus	77.4	77.64
CDX97399	Canola	nucleus	77.09	77.57
KRH68916	Soybean	nucleus	77.4	76.22
CDY56244	Canola	cytosol	62.23	69.55
CDY57244	Canola	cytosol	66.25	69.48
CDY64066	Canola	cytosol	23.22	69.44
CDY06889	Canola	cytosol	63.47	69.02
CDX71977	Canola	cytosol	65.94	68.71
CDY67927	Canola	cytosol	65.94	68.49
CDX88968	Canola	cytosol	65.63	68.17
CDY14808	Canola	cytosol	63.16	67.55
CDY06056	Canola	cytosol	54.49	67.18
CDY35390	Canola	nucleus	63.78	67.1
CDY22549	Canola	nucleus	63.78	66.67
CDY67278	Canola	cytosol	15.79	62.96
CDY67899	Canola	cytosol, plastid	31.27	60.84
VIT_15s0046g00400.t01	Wine grape	cytosol	47.06	56.3
VIT_00s0426g00040.t01	Wine grape	mitochondrion	40.25	53.94
CDY67900	Canola	cytosol, endoplasmic reticulum, plastid	45.82	53.62
CDY38819	Canola	nucleus	32.2	53.61
CDX75727	Canola	cytosol	35.29	53.27
VIT_15s0046g00390.t01	Wine grape	nucleus	43.65	52.42
VIT_15s0046g00410.t01	Wine grape	cytosol	29.1	51.93
CDX82523	Canola	cytosol	34.37	51.87
CDY14650	Canola	cytosol, nucleus, plastid	34.98	51.13
VIT_15s0046g00380.t01	Wine grape	cytosol	34.98	45.38
VIT_00s0726g00020.t01	Wine grape	extracellular	16.1	45.22
VIT_00s0663g00030.t01	Wine grape	cytosol, extracellular, nucleus	14.55	44.34
CDY11709	Canola	nucleus	14.24	27.88
CDY01699	Canola	nucleus, plastid	21.67	24.82
CDY52473	Canola	nucleus	20.74	23.59
CDY10787	Canola	plastid	21.05	23.53
CDX99687	Canola	nucleus	20.43	23.32
CDY25763	Canola	nucleus	18.58	22.06
CDY12498	Canola	nucleus	18.27	21.69
CDY47873	Canola	nucleus	20.43	20.37
CDY27008	Canola	nucleus	20.74	20.36
CDY36209	Canola	plastid	13.0	19.91
CDY01695	Canola	nucleus	18.58	19.42
CDY01756	Canola	cytosol, nucleus, plastid	17.65	19.19
CDX96138	Canola	nucleus	20.12	19.12
CDY36211	Canola	nucleus	21.05	18.84
CDX95911	Canola	cytosol, nucleus, plastid	16.72	18.37
CDX83363	Canola	cytosol, nucleus, plasma membrane	9.91	17.88
CDX96140	Canola	cytosol, nucleus, plastid	18.89	17.48
CDY70665	Canola	nucleus	15.79	15.74
CDY01757	Canola	cytosol	2.48	15.09
CDY01758	Canola	cytosol	12.38	9.15

Protein Annotations

KEGG:00220+6.3.2.-	KEGG:00261+6.3.2.-	KEGG:00380+6.3.2.-	MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10
InterPro:7-in-absentia-prot_TRAF-dom	GO:A0A078GIT3	UniProt:A0A078GIT3	EnsemblPlants:CDY25077	ProteinID:CDY25077	ProteinID:CDY25077.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006464	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0019538	GO:GO:0046872
EnsemblPlantsGene:GSBRNA2T00028919001	InterPro:IPR001841	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145
PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF42	InterPro:SINA-like	SUPFAM:SSF49599
SUPFAM:SSF57850	InterPro:TRAF-like	UniPathway:UPA00143	UniParc:UPI0004EED12C	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_SIAH	SEG:seg	:	:	:	:

Description

BnaC06g18190DE3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A078GIT3]

Coordinates

chrLK032168:-:179293..181396

Molecular Weight (calculated)

36634.4 Da

IEP (calculated)

6.870

GRAVY (calculated)

-0.476

Length

323 amino acids

Sequence
(BLAST)

001: MDLDSMDCAS TIDVTDDEEI HQDRHSYTSV SKHHSNNSNA NAASGLLPTT TSVHELLECP VCTNSMYPPI HQCHNGHTLC STCKNRVHNR CPTCRQELGD
101: IRCLALEKVA ESLELPCKYM SLGCPEIFPY YSKLKHETVC NFRPYNCPYA GSECSVMGDI PFLVAHLRDD HKVDMHSGCT FNHRYVKSNP REVENATWML
201: TVFHCFGQYF CLHFEAFQLG MAPVYMAFLR FMGDETEARN YNYSLEVGGY GRKLIWEGTP RSVRDSHRKV RDSHDGLIIQ RNMALFFSGG DRKELKLRVT
301: GRIWKEQQQS GEGGGGACIP NLS

Best Arabidopsis Sequence Match ( AT3G61790.1 )
(BLAST)

001: MDLDSMDCTS TMDVTDDEEI HQDRHSYASV SKHHHTNNNT TNVNAAASGL LPTTTSVHEL LECPVCTNSM YPPIHQCHNG HTLCSTCKAR VHNRCPTCRQ
101: ELGDIRCLAL EKVAESLELP CKHMSLGCPE IFPYYSKLKH ETVCNFRPYS CPYAGSECSV TGDIPFLVAH LRDDHKVDMH SGCTFNHRYV KSNPREVENA
201: TWMLTVFHCF GQYFCLHFEA FQLGMAPVYM AFLRFMGDET EARNYNYSLE VGGYGRKLIW EGTPRSVRDS HRKVRDSHDG LIIQRNMALF FSGGDRKELK
301: LRVTGRIWKE QQQSGEGGGA CIPNLS

Arabidopsis Description

SINAT3E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178V9V8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.