Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY14268 | Canola | nucleus | 96.88 | 97.19 |
| CDY19018 | Canola | nucleus | 92.52 | 92.24 |
| CDX89221 | Canola | nucleus | 91.9 | 91.61 |
| CDX92848 | Canola | nucleus | 86.92 | 91.48 |
| AT4G27880.1 | Thale cress | nucleus | 91.59 | 89.91 |
| PGSC0003DMT400023575 | Potato | cytosol | 79.75 | 81.53 |
| Solyc03g083270.2.1 | Tomato | cytosol | 79.44 | 81.47 |
| VIT_02s0025g01660.t01 | Wine grape | cytosol | 80.06 | 81.33 |
| PGSC0003DMT400050427 | Potato | cytosol | 77.57 | 79.05 |
| Solyc06g051980.2.1 | Tomato | cytosol | 76.95 | 78.41 |
| CDX67865 | Canola | nucleus | 77.57 | 77.09 |
| CDY25077 | Canola | nucleus | 77.57 | 77.09 |
| KRG97189 | Soybean | nucleus | 75.39 | 77.07 |
| GSMUA_Achr5P06970_001 | Banana | cytosol | 76.64 | 75.93 |
| CDY43950 | Canola | nucleus | 76.64 | 75.69 |
| CDX89132 | Canola | cytosol | 76.32 | 75.15 |
| KRH68916 | Soybean | nucleus | 73.52 | 71.95 |
| CDY56244 | Canola | cytosol | 61.99 | 68.86 |
| CDY64066 | Canola | cytosol | 23.05 | 68.52 |
| CDY57244 | Canola | cytosol | 65.73 | 68.51 |
| CDX88968 | Canola | cytosol | 66.36 | 68.49 |
| CDY67927 | Canola | cytosol | 66.36 | 68.49 |
| CDX71977 | Canola | cytosol | 65.73 | 68.06 |
| CDY06889 | Canola | cytosol | 62.31 | 67.34 |
| CDY06056 | Canola | cytosol | 54.83 | 67.18 |
| CDY14808 | Canola | cytosol | 61.99 | 65.89 |
| CDY35390 | Canola | nucleus | 61.99 | 64.82 |
| CDY22549 | Canola | nucleus | 62.31 | 64.72 |
| CDY67278 | Canola | cytosol | 14.95 | 59.26 |
| CDY67899 | Canola | cytosol, plastid | 30.22 | 58.43 |
| VIT_15s0046g00400.t01 | Wine grape | cytosol | 46.73 | 55.56 |
| CDX75727 | Canola | cytosol | 36.14 | 54.21 |
| VIT_00s0426g00040.t01 | Wine grape | mitochondrion | 40.5 | 53.94 |
| CDX82523 | Canola | cytosol | 35.2 | 52.8 |
| VIT_15s0046g00390.t01 | Wine grape | nucleus | 44.24 | 52.79 |
| CDY38819 | Canola | nucleus | 31.46 | 52.06 |
| VIT_15s0046g00410.t01 | Wine grape | cytosol | 29.28 | 51.93 |
| CDY67900 | Canola | cytosol, endoplasmic reticulum, plastid | 44.24 | 51.45 |
| CDY14650 | Canola | cytosol, nucleus, plastid | 33.96 | 49.32 |
| VIT_00s0663g00030.t01 | Wine grape | cytosol, extracellular, nucleus | 15.26 | 46.23 |
| VIT_00s0726g00020.t01 | Wine grape | extracellular | 16.51 | 46.09 |
| VIT_15s0046g00380.t01 | Wine grape | cytosol | 35.51 | 45.78 |
| CDY11709 | Canola | nucleus | 14.33 | 27.88 |
| CDY01699 | Canola | nucleus, plastid | 21.81 | 24.82 |
| CDY10787 | Canola | plastid | 22.12 | 24.57 |
| CDY52473 | Canola | nucleus | 21.18 | 23.94 |
| CDX99687 | Canola | nucleus | 20.87 | 23.67 |
| CDY12498 | Canola | nucleus | 19.31 | 22.79 |
| CDY25763 | Canola | nucleus | 19.0 | 22.43 |
| CDY47873 | Canola | nucleus | 22.43 | 22.22 |
| CDY27008 | Canola | nucleus | 22.74 | 22.19 |
| CDY01695 | Canola | nucleus | 19.63 | 20.39 |
| CDY36209 | Canola | plastid | 13.08 | 19.91 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 18.38 | 19.87 |
| CDX96138 | Canola | nucleus | 20.56 | 19.41 |
| CDY36211 | Canola | nucleus | 21.5 | 19.11 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 17.45 | 19.05 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 10.28 | 18.44 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 19.63 | 18.05 |
| CDY70665 | Canola | nucleus | 18.07 | 17.9 |
| CDY01757 | Canola | cytosol | 2.8 | 16.98 |
| CDY01758 | Canola | cytosol | 11.84 | 8.7 |
Protein Annotations
| KEGG:00220+6.3.2.- | KEGG:00261+6.3.2.- | KEGG:00380+6.3.2.- | MapMan:19.2.2.1.5.3.5 | Gene3D:2.60.210.10 | Gene3D:3.30.40.10 |
| InterPro:7-in-absentia-prot_TRAF-dom | GO:A0A078E9I3 | EnsemblPlants:CDX97399 | ProteinID:CDX97399 | ProteinID:CDX97399.1 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006511 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00104523001 | InterPro:IPR001841 | InterPro:IPR008974 | InterPro:IPR013010 |
| InterPro:IPR013083 | PFAM:PF03145 | PFscan:PS50089 | PFscan:PS51081 | PANTHER:PTHR10315 | PANTHER:PTHR10315:SF42 |
| InterPro:SINA-like | SUPFAM:SSF49599 | SUPFAM:SSF57850 | InterPro:TRAF-like | UniPathway:UPA00143 | UniParc:UPI0004EDC818 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | : | : | : |
Description
BnaC08g12640D
Coordinates
chrLK031899:+:330441..332025
Molecular Weight (calculated)
36194.9 Da
IEP (calculated)
6.979
GRAVY (calculated)
-0.379
Length
321 amino acids
Sequence
(BLAST)
(BLAST)
001: METESMDCES STRSIPNDNE TYHFSSTKKH AGAAAAVVTN IVGPTSTAAA TSVYELLECP VCTFSMYPPI HQCHNGHTLC STCKVRVHNR CPTCRQELGD
101: IRCLALEKVA ESLELPCKYY NLGCPEIFPY YSKLNHESLC NFRPYSCPYA GSECGVVGDI PFLVSHLRDD HKVDMHAGST FNHRYVKSNP REVENATWML
201: TVFQCFGQYF CLHFEAFQLG MGPVYMAFLR FMGDEEEARS YSYSLEVGGS GRKLTWEGTP RSIRDSHRKV RDSNDGLIIQ RNMALFFSSG DRKELKLRIT
301: GKIWKEQHSP DSGLCIPNLS S
101: IRCLALEKVA ESLELPCKYY NLGCPEIFPY YSKLNHESLC NFRPYSCPYA GSECGVVGDI PFLVSHLRDD HKVDMHAGST FNHRYVKSNP REVENATWML
201: TVFQCFGQYF CLHFEAFQLG MGPVYMAFLR FMGDEEEARS YSYSLEVGGS GRKLTWEGTP RSIRDSHRKV RDSNDGLIIQ RNMALFFSSG DRKELKLRIT
301: GKIWKEQHSP DSGLCIPNLS S
001: METDSMECVS STGNEIHQNG NGHQSYQFSS TKTHGGAAAA AVVTNIVGPT ATAPATSVYE LLECPVCTYS MYPPIHQCHN GHTLCSTCKV RVHNRCPTCR
101: QELGDIRCLA LEKVAESLEL PCKFYNLGCP EIFPYYSKLK HESLCNFRPY SCPYAGSECG IVGDIPFLVA HLRDDHKVDM HAGSTFNHRY VKSNPREVEN
201: ATWMLTVFHC FGQYFCLHFE AFQLGMGPVY MAFLRFMGDE EDARSYSYSL EVGGSGRKLT WEGTPRSIRD SHRKVRDSND GLIIQRNMAL FFSGGDRKEL
301: KLRVTGKIWK EQHSPDSGLS IPNLSSS
101: QELGDIRCLA LEKVAESLEL PCKFYNLGCP EIFPYYSKLK HESLCNFRPY SCPYAGSECG IVGDIPFLVA HLRDDHKVDM HAGSTFNHRY VKSNPREVEN
201: ATWMLTVFHC FGQYFCLHFE AFQLGMGPVY MAFLRFMGDE EDARSYSYSL EVGGSGRKLT WEGTPRSIRD SHRKVRDSND GLIIQRNMAL FFSGGDRKEL
301: KLRVTGKIWK EQHSPDSGLS IPNLSSS
Arabidopsis Description
SINAT4E3 ubiquitin-protein ligase SINAT4 [Source:UniProtKB/Swiss-Prot;Acc:Q9STN8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.