Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY67900 | Canola | cytosol, endoplasmic reticulum, plastid | 89.59 | 71.74 |
| CDY67899 | Canola | cytosol, plastid | 50.68 | 67.47 |
| CDY64066 | Canola | cytosol | 28.51 | 58.33 |
| CDY67278 | Canola | cytosol | 20.36 | 55.56 |
| CDY35390 | Canola | nucleus | 68.33 | 49.19 |
| CDY22549 | Canola | nucleus | 67.87 | 48.54 |
| CDY06056 | Canola | cytosol | 57.01 | 48.09 |
| CDY57244 | Canola | cytosol | 65.16 | 46.75 |
| CDX71977 | Canola | cytosol | 64.71 | 46.13 |
| CDY06889 | Canola | cytosol | 61.99 | 46.13 |
| CDX88968 | Canola | cytosol | 64.71 | 45.98 |
| CDY67927 | Canola | cytosol | 64.25 | 45.66 |
| CDY14808 | Canola | cytosol | 60.63 | 44.37 |
| CDY56244 | Canola | cytosol | 57.47 | 43.94 |
| VIT_08s0007g06740.t01 | Wine grape | cytosol | 62.44 | 43.81 |
| PGSC0003DMT400060947 | Potato | cytosol | 47.06 | 42.45 |
| PGSC0003DMT400060943 | Potato | cytosol | 47.06 | 42.45 |
| CDY38819 | Canola | nucleus | 37.1 | 42.27 |
| KRH67087 | Soybean | nucleus | 61.09 | 39.94 |
| KRG95412 | Soybean | nucleus | 61.09 | 39.47 |
| Solyc10g080570.1.1 | Tomato | cytosol | 52.94 | 38.61 |
| CDX92848 | Canola | nucleus | 49.32 | 35.74 |
| CDX67865 | Canola | nucleus | 51.13 | 34.98 |
| CDY25077 | Canola | nucleus | 51.13 | 34.98 |
| CDX89132 | Canola | cytosol | 50.68 | 34.36 |
| CDY19018 | Canola | nucleus | 49.77 | 34.16 |
| CDX89221 | Canola | nucleus | 49.77 | 34.16 |
| CDY43950 | Canola | nucleus | 50.23 | 34.15 |
| CDY14268 | Canola | nucleus | 49.32 | 34.06 |
| CDX97399 | Canola | nucleus | 49.32 | 33.96 |
| CDX82523 | Canola | cytosol | 25.79 | 26.64 |
| CDX75727 | Canola | cytosol | 25.34 | 26.17 |
| CDY11709 | Canola | nucleus | 8.6 | 11.52 |
| CDY25763 | Canola | nucleus | 13.12 | 10.66 |
| CDX99687 | Canola | nucleus | 13.57 | 10.6 |
| CDY52473 | Canola | nucleus | 13.57 | 10.56 |
| CDY12498 | Canola | nucleus | 12.67 | 10.29 |
| CDY47873 | Canola | nucleus | 14.93 | 10.19 |
| CDY27008 | Canola | nucleus | 14.93 | 10.03 |
| CDY10787 | Canola | plastid | 12.67 | 9.69 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 7.24 | 8.94 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 11.76 | 8.75 |
| CDY36209 | Canola | plastid | 8.14 | 8.53 |
| CDX96138 | Canola | nucleus | 13.12 | 8.53 |
| CDY01699 | Canola | nucleus, plastid | 10.86 | 8.51 |
| CDY01695 | Canola | nucleus | 11.76 | 8.41 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 10.86 | 8.16 |
| CDY36211 | Canola | nucleus | 13.12 | 8.03 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 11.76 | 7.45 |
| CDY70665 | Canola | nucleus | 10.86 | 7.41 |
| CDY01758 | Canola | cytosol | 7.69 | 3.89 |
| CDY01757 | Canola | cytosol | 0.45 | 1.89 |
Protein Annotations
| KEGG:00220+6.3.2.- | KEGG:00261+6.3.2.- | KEGG:00380+6.3.2.- | MapMan:19.2.2.1.5.3.5 | Gene3D:2.60.210.10 | InterPro:7-in-absentia-prot_TRAF-dom |
| GO:A0A078FJP9 | UniProt:A0A078FJP9 | EnsemblPlants:CDY14650 | ProteinID:CDY14650 | ProteinID:CDY14650.1 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006464 | GO:GO:0006511 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0016567 | GO:GO:0019538 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00084427001 | InterPro:IPR008974 |
| PFAM:PF03145 | PANTHER:PTHR10315 | PANTHER:PTHR10315:SF73 | InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like |
| UniPathway:UPA00143 | UniParc:UPI0004EDCE24 | SEG:seg | : | : | : |
Description
BnaC02g24630DE3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A078FJP9]
Coordinates
chrLK032045:+:820355..821823
Molecular Weight (calculated)
25328.9 Da
IEP (calculated)
10.342
GRAVY (calculated)
-0.277
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPGGSTYKE ALKSNWIGLA YEVRMSPLEK SVQARAMVFM SFSNVRVPMA TRYLGNIRCL ALEKVAESLE VSCRYQSLGC HDIFPYYRKV KHEQHCSISK
101: TIIKSICIVV ALSTTVNVKS NPQEVENATW MLTVFNFFGR QFCLHFEAFQ LGTAPVYMAF LRFMGDENEA KKFSYGLETW VIKKKKKKVG AHSRKLTWQG
201: IPRSIRDGHR KVREPGRSHH P
101: TIIKSICIVV ALSTTVNVKS NPQEVENATW MLTVFNFFGR QFCLHFEAFQ LGTAPVYMAF LRFMGDENEA KKFSYGLETW VIKKKKKKVG AHSRKLTWQG
201: IPRSIRDGHR KVREPGRSHH P
001: MAPGGSALKE ALESNSTGVD YEVKMAKVEA NSKPTKSGSG SIGKFHSSNG VYELLECPVC TNLMYPPIHQ CPNGHTLCSS CKLRVQNTCP TCRYELGNIR
101: CLALEKVAES LEVPCRYQNL GCQDIFPYYS KLKHEQHCRF RSYSCPYAGS ECSVTGDIPT LVDHLKDDHK VDMHDGCTFN HRYVKSNPHE VENATWMLTV
201: FNCFGRQFCL HFEAFQLGMA PVYMAFLRFM GDENEAKKFS YSLEVGAHSR KLTWQGIPRS IRDSHRKVRD SQDGLIIPRN LALYFSGSDK EELKLRVTGR
301: IWKEE
101: CLALEKVAES LEVPCRYQNL GCQDIFPYYS KLKHEQHCRF RSYSCPYAGS ECSVTGDIPT LVDHLKDDHK VDMHDGCTFN HRYVKSNPHE VENATWMLTV
201: FNCFGRQFCL HFEAFQLGMA PVYMAFLRFM GDENEAKKFS YSLEVGAHSR KLTWQGIPRS IRDSHRKVRD SQDGLIIPRN LALYFSGSDK EELKLRVTGR
301: IWKEE
Arabidopsis Description
SINAT1E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178VZ75]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.