Factsheet for VIT_08s0007g06740.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY57244	Canola	cytosol	80.95	82.79
CDY56244	Canola	cytosol	75.56	82.35
CDX71977	Canola	cytosol	80.95	82.26
AT3G58040.3	Thale cress	cytosol	80.32	82.14
Bra003315.1-P	Field mustard	cytosol, nucleus, plastid	67.62	81.92
CDY06889	Canola	cytosol	77.14	81.82
AT2G41980.1	Thale cress	nucleus	78.73	81.31
CDY67927	Canola	cytosol	80.0	81.03
CDX88968	Canola	cytosol	80.0	81.03
CDY06056	Canola	cytosol	67.3	80.92
CDY22549	Canola	nucleus	78.73	80.26
Bra000249.1-P	Field mustard	nucleus	77.78	79.8
CDY35390	Canola	nucleus	77.78	79.8
Bra016898.1-P	Field mustard	cytosol	77.14	79.67
CDY14808	Canola	cytosol	76.19	79.47
Bra014589.1-P	Field mustard	nucleus	73.33	79.11
CDY64066	Canola	cytosol	26.98	78.7
VIT_06s0004g01130.t01	Wine grape	cytosol	76.51	78.25
Bra008328.1-P	Field mustard	cytosol	26.35	76.85
PGSC0003DMT400060943	Potato	cytosol	59.05	75.92
PGSC0003DMT400060947	Potato	cytosol	59.05	75.92
KRH67087	Soybean	nucleus	79.05	73.67
KRG95412	Soybean	nucleus	79.05	72.81
VIT_13s0139g00150.t01	Wine grape	cytosol, nucleus, plastid	69.84	72.13
Bra007376.1-P	Field mustard	cytosol	62.86	71.74
VIT_02s0025g01660.t01	Wine grape	cytosol	70.48	70.25
Solyc10g080570.1.1	Tomato	cytosol	65.08	67.66
VIT_16s0098g01850.t01	Wine grape	cytosol	68.57	66.06
CDY67899	Canola	cytosol, plastid	34.6	65.66
CDY14650	Canola	cytosol, nucleus, plastid	43.81	62.44
CDY67900	Canola	cytosol, endoplasmic reticulum, plastid	53.97	61.59
CDY38819	Canola	nucleus	34.92	56.7
VIT_15s0046g00400.t01	Wine grape	cytosol	45.08	52.59
VIT_00s0426g00040.t01	Wine grape	mitochondrion	38.73	50.62
VIT_15s0046g00390.t01	Wine grape	nucleus	42.22	49.44
VIT_15s0046g00410.t01	Wine grape	cytosol	26.98	46.96
VIT_00s0663g00030.t01	Wine grape	cytosol, extracellular, nucleus	14.6	43.4
VIT_15s0046g00380.t01	Wine grape	cytosol	33.65	42.57
VIT_00s0726g00020.t01	Wine grape	extracellular	15.24	41.74
VIT_14s0006g01870.t01	Wine grape	cytosol	13.33	21.0

Protein Annotations

EntrezGene:100233085	wikigene:100233085	MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom
ProteinID:CAB40578	ProteinID:CAB40578.1	ProteinID:CBI29998	ProteinID:CBI29998.3	EMBL:FN595991	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006464	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
GO:GO:0046872	GO:GO:0061630	InterPro:IPR001841	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083
EntrezGene:LOC100233085	wikigene:LOC100233085	RefSeq:NP_001268043.1	PFAM:PF03145	PFscan:PS50089	PFscan:PS51081
PANTHER:PTHR10315	PANTHER:PTHR10315:SF73	UniProt:Q9XGC3	InterPro:SINA-like	SUPFAM:SSF49599	SUPFAM:SSF57850
TIGR:TC54448	InterPro:TRAF-like	UniParc:UPI00000A8E45	ArrayExpress:VIT_08s0007g06740	EnsemblPlantsGene:VIT_08s0007g06740	EnsemblPlants:VIT_08s0007g06740.t01
RefSeq:XP_010653732.1	RefSeq:XP_010653734.1	EMBL:Y18472	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH

Description

E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:Q9XGC3]

Coordinates

chr8:+:20404886..20408769

Molecular Weight (calculated)

35583.4 Da

IEP (calculated)

7.582

GRAVY (calculated)

-0.447

Length

315 amino acids

Sequence
(BLAST)

001: MAPGGSTYKE VLESHSTVTD YDIAMTKADT NLTPAKTTAG LSGKKGISSP NGVHELLECP VCTSLMYPPI YQCPSGHTLC SNCKSRVHNC CPTCRHELGD
101: IRCLALEKVA ESLELPCRYQ SLGCHDIFPY YSKLKHEQQC RFHPYNCPYA GFECSVTGDI PTLVEHLKGD HKVDMHDGCT FNHRYVKSNP QEVENATWML
201: TVFNCFGKQF CLHFEAFQLG TAPVYMAFLR FMGDDNEAKK FSYSLEVGGN SRKLIWQGVP RSIRDSHRKV RDSQDGLIIQ RNLALYFSGG DRQELKLRVT
301: GRIWKESELW KDNGC

Best Arabidopsis Sequence Match ( AT3G58040.1 )
(BLAST)

001: MAPGGSALKE VMESNSTGMD YEVKTAKVEV NNNKPTKPGS AGIGKYGIHS NNGVYELLEC PVCTNLMYPP IHQCPNGHTL CSNCKLRVQN TCPTCRYELG
101: NIRCLALEKV AESLEVPCRY QNLGCHDIFP YYSKLKHEQH CRFRPYTCPY AGSECSVTGD IPTLVVHLKD DHKVDMHDGC TFNHRYVKSN PHEVENATWM
201: LTVFNCFGRQ FCLHFEAFQL GMAPVYMAFL RFMGDENEAK KFSYSLEVGA HGRKLTWQGI PRSIRDSHRK VRDSQDGLII PRNLALYFSG GDRQELKLRV
301: TGRIWKEE

Arabidopsis Description

SINAT2E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178VHN9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.