Factsheet for Bra003315.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY56244	Canola	cytosol	97.31	87.54
Bra008328.1-P	Field mustard	cytosol	35.38	85.19
Bra007376.1-P	Field mustard	cytosol	90.38	85.14
Bra014589.1-P	Field mustard	nucleus	92.31	82.19
AT3G58040.3	Thale cress	cytosol	96.15	81.17
Bra016898.1-P	Field mustard	cytosol	85.0	72.46
Bra000249.1-P	Field mustard	nucleus	83.46	70.68
VIT_08s0007g06740.t01	Wine grape	cytosol	81.92	67.62
PGSC0003DMT400060947	Potato	cytosol	58.85	62.45
PGSC0003DMT400060943	Potato	cytosol	58.85	62.45
KRH67087	Soybean	nucleus	81.15	62.43
KRG95412	Soybean	nucleus	81.15	61.7
Bra026301.1-P	Field mustard	nucleus	68.85	55.59
Solyc10g080570.1.1	Tomato	cytosol	64.62	55.45
Bra010392.1-P	Field mustard	nucleus	68.08	55.31
Bra003473.1-P	Field mustard	nucleus	66.92	54.72
Bra014421.1-P	Field mustard	cytosol	67.31	54.69
Bra001519.1-P	Field mustard	nucleus	40.38	49.07
Bra025434.1-P	Field mustard	nucleus	20.0	18.31
Bra018266.1-P	Field mustard	plastid	19.23	17.3
Bra000425.1-P	Field mustard	nucleus	18.46	16.96
Bra022858.1-P	Field mustard	nucleus	19.62	16.78
Bra012354.1-P	Field mustard	cytosol	16.92	16.18
Bra028395.1-P	Field mustard	nucleus	20.0	16.05
Bra004401.1-P	Field mustard	cytosol, mitochondrion, nucleus	16.54	15.99
Bra004176.1-P	Field mustard	nucleus	18.85	14.54
Bra004174.1-P	Field mustard	nucleus	17.31	12.75
Bra004402.1-P	Field mustard	nucleus	15.38	12.62
Bra019710.1-P	Field mustard	nucleus	15.0	11.4

Protein Annotations

MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	EnsemblPlantsGene:Bra003315	EnsemblPlants:Bra003315.1
EnsemblPlants:Bra003315.1-P	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0006511	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0019538
GO:GO:0046872	InterPro:IPR001841	InterPro:IPR008974	InterPro:IPR013083	UniProt:M4CGI2	PFAM:PF03145
PFscan:PS50089	PANTHER:PTHR10315	PANTHER:PTHR10315:SF73	InterPro:SINA-like	SUPFAM:SSF49599	SUPFAM:SSF57850
InterPro:TRAF-like	UniParc:UPI0002541626	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	:	:

Description

AT3G58040 (E=1e-080) SINAT2 | SINAT2 (SEVEN IN ABSENTIA OF ARABIDOPSIS 2); protein binding / ubiquitin-protein ligase/ zinc ion binding

Coordinates

chrA07:+:12564120..12565159

Molecular Weight (calculated)

29409.2 Da

IEP (calculated)

8.165

GRAVY (calculated)

-0.496

Length

260 amino acids

Sequence
(BLAST)

001: MAPGGSALKE VLESTSTGMD YEVKMAKAEV NNNKPTKSGS AGVGKYGMHS NNGVYELLEC PVCTNLMYPP IHQCPNGHTL CSNCKARVQN TCPTCRYELG
101: NIRCLALEKV AESLEVPCRY QNDHKVDMHD GCTFNHRYVK SNPHEVENAT WMLTVFNCFG RQFCLHFEAF QLGMAPVYMA FLRFMGDENE AKKFSYSLEV
201: GAHGRKLTWQ GIPRSIRDSH RKVRDSQDGL IIPRNLALYF SGGDRQELKL RVTGRIWKEE

Best Arabidopsis Sequence Match ( AT3G58040.1 )
(BLAST)

001: MAPGGSALKE VMESNSTGMD YEVKTAKVEV NNNKPTKPGS AGIGKYGIHS NNGVYELLEC PVCTNLMYPP IHQCPNGHTL CSNCKLRVQN TCPTCRYELG
101: NIRCLALEKV AESLEVPCRY QNLGCHDIFP YYSKLKHEQH CRFRPYTCPY AGSECSVTGD IPTLVVHLKD DHKVDMHDGC TFNHRYVKSN PHEVENATWM
201: LTVFNCFGRQ FCLHFEAFQL GMAPVYMAFL RFMGDENEAK KFSYSLEVGA HGRKLTWQGI PRSIRDSHRK VRDSQDGLII PRNLALYFSG GDRQELKLRV
301: TGRIWKEE

Arabidopsis Description

SINAT2E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178VHN9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.