Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400060947 | Potato | cytosol | 74.92 | 92.65 |
| PGSC0003DMT400060943 | Potato | cytosol | 74.92 | 92.65 |
| AT3G58040.3 | Thale cress | cytosol | 67.66 | 66.56 |
| CDY56244 | Canola | cytosol | 63.37 | 66.44 |
| CDY57244 | Canola | cytosol | 67.33 | 66.23 |
| AT2G41980.1 | Thale cress | nucleus | 66.67 | 66.23 |
| CDX71977 | Canola | cytosol | 67.33 | 65.81 |
| CDY67927 | Canola | cytosol | 67.0 | 65.27 |
| CDX88968 | Canola | cytosol | 67.0 | 65.27 |
| VIT_08s0007g06740.t01 | Wine grape | cytosol | 67.66 | 65.08 |
| CDY06889 | Canola | cytosol | 63.7 | 64.98 |
| Bra000249.1-P | Field mustard | nucleus | 65.68 | 64.82 |
| CDY35390 | Canola | nucleus | 65.68 | 64.82 |
| Bra008328.1-P | Field mustard | cytosol | 23.1 | 64.81 |
| Bra003315.1-P | Field mustard | cytosol, nucleus, plastid | 55.45 | 64.62 |
| CDY06056 | Canola | cytosol | 55.78 | 64.5 |
| Bra014589.1-P | Field mustard | nucleus | 61.72 | 64.04 |
| CDY64066 | Canola | cytosol | 22.77 | 63.89 |
| CDY22549 | Canola | nucleus | 65.02 | 63.75 |
| Bra016898.1-P | Field mustard | cytosol | 63.7 | 63.28 |
| CDY14808 | Canola | cytosol | 62.71 | 62.91 |
| Solyc01g006190.2.1 | Tomato | cytosol | 61.72 | 60.71 |
| Solyc03g083270.2.1 | Tomato | cytosol | 60.73 | 58.79 |
| Solyc06g051980.2.1 | Tomato | cytosol | 60.73 | 58.41 |
| KRH67087 | Soybean | nucleus | 64.69 | 57.99 |
| Solyc10g009420.2.1 | Tomato | nucleus | 60.07 | 57.59 |
| KRG95412 | Soybean | nucleus | 64.69 | 57.31 |
| CDY67899 | Canola | cytosol, plastid | 31.02 | 56.63 |
| Solyc05g050580.2.1 | Tomato | nucleus | 61.06 | 55.89 |
| Bra007376.1-P | Field mustard | cytosol | 50.83 | 55.8 |
| Solyc01g096020.2.1 | Tomato | cytosol | 60.07 | 54.65 |
| Solyc02g069880.2.1 | Tomato | cytosol | 36.3 | 54.46 |
| CDY14650 | Canola | cytosol, nucleus, plastid | 38.61 | 52.94 |
| CDY67900 | Canola | cytosol, endoplasmic reticulum, plastid | 47.19 | 51.81 |
| CDY38819 | Canola | nucleus | 31.35 | 48.97 |
| Solyc06g017910.1.1 | Tomato | cytosol | 11.22 | 39.08 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 17.49 | 23.98 |
| Solyc03g034460.2.1 | Tomato | nucleus | 22.44 | 18.89 |
| Solyc03g042550.1.1 | Tomato | nucleus | 21.78 | 18.33 |
| Solyc03g034450.2.1 | Tomato | nucleus | 21.78 | 16.84 |
| Solyc03g042520.1.1 | Tomato | nucleus | 16.83 | 16.45 |
Protein Annotations
| MapMan:19.2.2.1.5.3.5 | Gene3D:2.60.210.10 | Gene3D:3.30.40.10 | InterPro:7-in-absentia-prot_TRAF-dom | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006464 | GO:GO:0006511 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 |
| GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0046872 |
| GO:GO:0061630 | InterPro:IPR001841 | InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | UniProt:K4D2U7 |
| PFAM:PF03145 | PFscan:PS50089 | PFscan:PS51081 | PANTHER:PTHR10315 | PANTHER:PTHR10315:SF29 | InterPro:SINA-like |
| SUPFAM:SSF49599 | SUPFAM:SSF57850 | EnsemblPlantsGene:Solyc10g080570.1 | EnsemblPlants:Solyc10g080570.1.1 | InterPro:TRAF-like | UniParc:UPI00027694B7 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | : | : | : |
Description
E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:K4D2U7]
Coordinates
chr10:+:61806568..61808388
Molecular Weight (calculated)
34710.0 Da
IEP (calculated)
8.056
GRAVY (calculated)
-0.300
Length
303 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPGGGVSSC KELVESWQKV SRFDTTNIHD ELEKSITCIG EKFQKCSIHE LLECPICRRF MYPPFYQCPN GHTLCTNCKI EATDFCPTCK VELGNIRCLA
101: LEKVAESLEL PCRHQNLGCH KILPYYRKLK HERHCKFRPY HCPYAGSECS IKGDIPTLML HLKEDHKVDM HSGCTFNHRY VKSNAQQVDN AIWMLTVFDC
201: FGRQFVLHFE AFSLGMTPVY IAFLRFMGED NEAKMFNYSL QVGGYGRKLT WQGVPRSIRD SHGKVRDCQD GLIIPRSLAF FFSGGNGEEL TLKVIGRIWK
301: ESA
101: LEKVAESLEL PCRHQNLGCH KILPYYRKLK HERHCKFRPY HCPYAGSECS IKGDIPTLML HLKEDHKVDM HSGCTFNHRY VKSNAQQVDN AIWMLTVFDC
201: FGRQFVLHFE AFSLGMTPVY IAFLRFMGED NEAKMFNYSL QVGGYGRKLT WQGVPRSIRD SHGKVRDCQD GLIIPRSLAF FFSGGNGEEL TLKVIGRIWK
301: ESA
001: MAPGGSALKE ALESNSTGVD YEVKMAKVEA NSKPTKSGSG SIGKFHSSNG VYELLECPVC TNLMYPPIHQ CPNGHTLCSS CKLRVQNTCP TCRYELGNIR
101: CLALEKVAES LEVPCRYQNL GCQDIFPYYS KLKHEQHCRF RSYSCPYAGS ECSVTGDIPT LVDHLKDDHK VDMHDGCTFN HRYVKSNPHE VENATWMLTV
201: FNCFGRQFCL HFEAFQLGMA PVYMAFLRFM GDENEAKKFS YSLEVGAHSR KLTWQGIPRS IRDSHRKVRD SQDGLIIPRN LALYFSGSDK EELKLRVTGR
301: IWKEE
101: CLALEKVAES LEVPCRYQNL GCQDIFPYYS KLKHEQHCRF RSYSCPYAGS ECSVTGDIPT LVDHLKDDHK VDMHDGCTFN HRYVKSNPHE VENATWMLTV
201: FNCFGRQFCL HFEAFQLGMA PVYMAFLRFM GDENEAKKFS YSLEVGAHSR KLTWQGIPRS IRDSHRKVRD SQDGLIIPRN LALYFSGSDK EELKLRVTGR
301: IWKEE
Arabidopsis Description
SINAT1E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178VZ75]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.