Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400043050 | Potato | nucleus | 90.82 | 93.44 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 47.96 | 85.07 |
| Solyc03g034460.2.1 | Tomato | nucleus | 74.74 | 81.39 |
| Solyc03g042550.1.1 | Tomato | nucleus | 73.72 | 80.28 |
| Solyc03g042520.1.1 | Tomato | nucleus | 57.14 | 72.26 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 23.72 | 46.5 |
| HORVU3Hr1G005260.1 | Barley | cytosol | 10.46 | 45.05 |
| KRH58384 | Soybean | nucleus | 30.1 | 36.88 |
| KRH42263 | Soybean | nucleus | 29.85 | 36.56 |
| CDY11709 | Canola | nucleus | 14.54 | 34.55 |
| Bra028395.1-P | Field mustard | nucleus | 27.55 | 33.33 |
| CDY47873 | Canola | nucleus | 27.55 | 33.33 |
| CDY27008 | Canola | nucleus | 27.81 | 33.13 |
| CDY01699 | Canola | nucleus, plastid | 22.96 | 31.91 |
| CDY12498 | Canola | nucleus | 21.94 | 31.62 |
| CDY25763 | Canola | nucleus | 21.94 | 31.62 |
| Bra004401.1-P | Field mustard | cytosol, mitochondrion, nucleus | 21.68 | 31.6 |
| Bra012354.1-P | Field mustard | cytosol | 21.68 | 31.25 |
| AT5G37930.1 | Thale cress | nucleus | 27.81 | 31.23 |
| HORVU3Hr1G004860.1 | Barley | cytosol | 19.64 | 30.56 |
| AT5G37910.1 | Thale cress | nucleus | 21.43 | 30.43 |
| CDX99687 | Canola | nucleus | 21.94 | 30.39 |
| CDY52473 | Canola | nucleus | 21.94 | 30.28 |
| Bra018266.1-P | Field mustard | plastid | 22.19 | 30.1 |
| CDY10787 | Canola | plastid | 22.19 | 30.1 |
| AT5G37870.1 | Thale cress | nucleus | 21.43 | 29.89 |
| Bra025434.1-P | Field mustard | nucleus | 21.43 | 29.58 |
| AT1G66620.1 | Thale cress | nucleus | 23.47 | 29.39 |
| CDY36209 | Canola | plastid | 15.82 | 29.38 |
| Bra000425.1-P | Field mustard | nucleus | 21.17 | 29.33 |
| Bra022858.1-P | Field mustard | nucleus | 22.7 | 29.28 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 21.94 | 29.25 |
| TraesCS3D01G028800.1 | Wheat | nucleus | 15.82 | 28.97 |
| TraesCS3B01G053400.1 | Wheat | cytosol, nucleus, plastid | 21.17 | 28.33 |
| AT5G37890.1 | Thale cress | nucleus | 20.66 | 28.32 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 21.43 | 28.28 |
| TraesCS3B01G031200.1 | Wheat | nucleus | 20.66 | 27.74 |
| TraesCS3D01G031300.1 | Wheat | nucleus | 19.39 | 27.74 |
| AT1G66630.1 | Thale cress | cytosol | 21.43 | 27.72 |
| OQU78944 | Sorghum | nucleus | 22.96 | 27.61 |
| KXG32008 | Sorghum | cytosol, nucleus, plastid | 18.62 | 27.44 |
| AT5G37900.1 | Thale cress | nucleus | 16.84 | 27.39 |
| TraesCS3A01G048300.1 | Wheat | nucleus | 19.13 | 27.37 |
| TraesCS3B01G033800.1 | Wheat | nucleus | 19.13 | 27.37 |
| TraesCS3D01G504900.1 | Wheat | nucleus | 19.13 | 27.37 |
| HORVU4Hr1G056260.1 | Barley | nucleus | 19.13 | 27.27 |
| Zm00001d041049_P001 | Maize | nucleus | 22.7 | 27.22 |
| TraesCS3A01G031100.1 | Wheat | cytosol | 18.62 | 27.14 |
| TraesCS3B01G074800.1 | Wheat | cytosol | 19.13 | 27.08 |
| TraesCS3A01G030800.1 | Wheat | cytosol | 18.88 | 26.91 |
| TraesCS5A01G531400.2 | Wheat | nucleus | 22.7 | 26.89 |
| AT1G66650.1 | Thale cress | nucleus | 22.45 | 26.75 |
| TraesCS3A01G062700.1 | Wheat | nucleus | 18.62 | 26.55 |
| Bra004402.1-P | Field mustard | nucleus | 21.43 | 26.5 |
| KXG32014 | Sorghum | nucleus | 14.8 | 26.36 |
| TraesCS3B01G053000.1 | Wheat | cytosol | 18.88 | 26.33 |
| TraesCS3B01G050100.1 | Wheat | cytosol | 18.37 | 26.28 |
| TraesCS4D01G356400.2 | Wheat | nucleus | 22.45 | 26.19 |
| AT1G66660.2 | Thale cress | nucleus | 23.21 | 26.15 |
| Bra004176.1-P | Field mustard | nucleus | 22.45 | 26.11 |
| Bra004174.1-P | Field mustard | nucleus | 23.47 | 26.06 |
| TraesCS4B01G363200.1 | Wheat | nucleus | 21.68 | 25.91 |
| TraesCS3B01G560800.1 | Wheat | nucleus | 18.37 | 25.9 |
| TraesCS3B01G053500.1 | Wheat | cytosol | 18.62 | 25.89 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 22.96 | 25.79 |
| TraesCS3D01G030300.1 | Wheat | nucleus | 19.64 | 25.75 |
| Solyc02g069880.2.1 | Tomato | cytosol | 13.27 | 25.74 |
| HORVU2Hr1G118560.2 | Barley | nucleus | 18.37 | 25.71 |
| TraesCS3B01G033700.1 | Wheat | nucleus | 19.13 | 25.68 |
| CDX96138 | Canola | nucleus | 22.19 | 25.59 |
| TraesCS3D01G029000.1 | Wheat | cytosol | 18.37 | 25.53 |
| Bra019710.1-P | Field mustard | nucleus | 22.19 | 25.44 |
| KXG32009 | Sorghum | nucleus | 19.13 | 25.34 |
| CDY70665 | Canola | nucleus | 20.92 | 25.31 |
| CDY01695 | Canola | nucleus | 19.9 | 25.24 |
| TraesCS3B01G052800.1 | Wheat | cytosol | 18.11 | 25.18 |
| CDY36211 | Canola | nucleus | 22.96 | 24.93 |
| TraesCS3B01G050200.1 | Wheat | nucleus | 15.56 | 24.7 |
| TraesCS3B01G050900.1 | Wheat | cytosol | 18.37 | 24.66 |
| HORVU4Hr1G087120.3 | Barley | nucleus | 22.45 | 24.58 |
| CDY01757 | Canola | cytosol | 3.32 | 24.53 |
| TraesCS3A01G030600.1 | Wheat | nucleus | 17.6 | 24.47 |
| KXG37942 | Sorghum | cytosol, nucleus, plastid | 16.58 | 24.44 |
| TraesCS1A01G060800.1 | Wheat | nucleus | 19.13 | 24.43 |
| HORVU3Hr1G004950.1 | Barley | nucleus | 18.62 | 24.33 |
| TraesCS3B01G032100.1 | Wheat | cytosol | 17.6 | 24.3 |
| TraesCS3A01G031200.1 | Wheat | cytosol | 16.58 | 24.25 |
| TraesCS3D01G015600.1 | Wheat | cytosol | 18.37 | 24.24 |
| TraesCS3B01G050700.1 | Wheat | nucleus | 18.88 | 24.1 |
| TraesCS3A01G030100.1 | Wheat | nucleus | 18.11 | 23.91 |
| AT5G62800.1 | Thale cress | nucleus | 21.17 | 23.85 |
| HORVU3Hr1G005320.1 | Barley | nucleus | 16.07 | 23.77 |
| TraesCS3B01G054400.1 | Wheat | cytosol | 17.86 | 23.57 |
| KXG37941 | Sorghum | cytosol | 16.58 | 23.21 |
| TraesCS3B01G028900.1 | Wheat | cytosol | 17.6 | 22.92 |
| TraesCSU01G045900.1 | Wheat | cytosol | 17.35 | 22.74 |
| AT1G66610.1 | Thale cress | nucleus | 21.17 | 22.68 |
| HORVU3Hr1G004890.1 | Barley | nucleus | 17.35 | 22.67 |
| TraesCS3A01G062800.1 | Wheat | nucleus | 16.58 | 22.41 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 10.2 | 22.35 |
| TraesCS2A01G586400.1 | Wheat | nucleus | 20.66 | 22.19 |
| TraesCS2D01G600200.1 | Wheat | nucleus | 20.66 | 22.19 |
| TraesCSU01G021700.1 | Wheat | nucleus | 20.66 | 22.19 |
| TraesCS2A01G446400.1 | Wheat | cytosol, nucleus, plastid | 15.05 | 21.93 |
| Solyc06g051980.2.1 | Tomato | cytosol | 17.6 | 21.9 |
| TraesCS1D01G061700.1 | Wheat | nucleus | 19.64 | 21.88 |
| HORVU3Hr1G004880.2 | Barley | nucleus | 18.88 | 21.83 |
| Solyc10g080570.1.1 | Tomato | cytosol | 16.84 | 21.78 |
| Solyc01g006190.2.1 | Tomato | cytosol | 17.09 | 21.75 |
| TraesCS3B01G052700.1 | Wheat | nucleus | 14.03 | 21.74 |
| EES17728 | Sorghum | cytosol, mitochondrion, nucleus | 18.11 | 21.71 |
| Solyc10g009420.2.1 | Tomato | nucleus | 17.35 | 21.52 |
| TraesCS3B01G032300.1 | Wheat | cytosol | 10.97 | 21.5 |
| TraesCS2A01G589200.1 | Wheat | nucleus, plastid | 20.41 | 21.45 |
| HORVU1Hr1G012490.3 | Barley | nucleus | 18.11 | 21.39 |
| TraesCS2D01G564800.1 | Wheat | nucleus, plastid | 20.41 | 21.33 |
| TraesCS3D01G029600.1 | Wheat | nucleus | 18.11 | 21.19 |
| TraesCS3D01G029300.1 | Wheat | nucleus | 18.37 | 21.18 |
| Solyc03g083270.2.1 | Tomato | cytosol | 16.84 | 21.09 |
| TraesCS2B01G594500.1 | Wheat | nucleus, plastid | 20.15 | 21.07 |
| OQU77422 | Sorghum | cytosol | 15.31 | 20.98 |
| TraesCS5A01G228300.1 | Wheat | cytosol | 16.84 | 20.95 |
| HORVU2Hr1G118840.1 | Barley | plastid | 19.64 | 20.75 |
| TraesCS3A01G032200.1 | Wheat | nucleus | 17.6 | 20.29 |
| TraesCS3B01G052400.1 | Wheat | nucleus | 17.6 | 20.29 |
| Solyc01g096020.2.1 | Tomato | cytosol | 17.09 | 20.12 |
| OQU86453 | Sorghum | cytosol | 10.97 | 20.09 |
| Solyc05g050580.2.1 | Tomato | nucleus | 16.84 | 19.94 |
| TraesCS3A01G031300.1 | Wheat | cytosol | 14.29 | 19.93 |
| EES00387 | Sorghum | nucleus | 15.82 | 19.44 |
| TraesCSU01G231400.1 | Wheat | nucleus | 16.84 | 19.08 |
| HORVU3Hr1G005270.1 | Barley | nucleus | 16.33 | 18.77 |
| OQU77414 | Sorghum | mitochondrion, nucleus | 16.84 | 18.64 |
| OQU77425 | Sorghum | nucleus | 17.86 | 18.62 |
| HORVU0Hr1G006120.2 | Barley | cytosol, nucleus, plastid | 13.27 | 18.57 |
| EES17731 | Sorghum | nucleus | 16.07 | 18.21 |
| KXG21322 | Sorghum | nucleus | 17.09 | 17.91 |
| TraesCS1A01G070000.1 | Wheat | plastid | 10.97 | 17.7 |
| TraesCS1D01G102900.1 | Wheat | nucleus | 17.09 | 17.54 |
| HORVU0Hr1G006130.1 | Barley | nucleus | 14.54 | 17.27 |
| TraesCS3D01G029400.1 | Wheat | nucleus | 20.15 | 17.21 |
| TraesCS3A01G032100.1 | Wheat | nucleus | 19.9 | 17.11 |
| TraesCS3B01G052300.1 | Wheat | nucleus | 19.39 | 16.38 |
| EES02574 | Sorghum | nucleus | 18.37 | 16.07 |
| EES17735 | Sorghum | mitochondrion | 18.11 | 15.81 |
| CDY01758 | Canola | cytosol | 16.84 | 15.1 |
| TraesCS3D01G029700.1 | Wheat | cytosol, mitochondrion, nucleus | 10.97 | 15.09 |
| TraesCS3B01G031100.1 | Wheat | nucleus | 15.31 | 14.81 |
| Os05t0152700-00 | Rice | cytosol, extracellular | 1.79 | 7.07 |
| Solyc06g017910.1.1 | Tomato | cytosol | 1.53 | 6.9 |
Protein Annotations
| MapMan:19.2.2.1.5.3.5 | Gene3D:3.30.40.10 | InterPro:7-in-absentia-prot_TRAF-dom | ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006464 | GO:GO:0006511 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 |
| GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0046872 |
| GO:GO:0061630 | InterPro:IPR001841 | InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | UniProt:K4BFW5 |
| PFAM:PF03145 | PFscan:PS50089 | PFscan:PS51081 | PANTHER:PTHR10315 | PANTHER:PTHR10315:SF43 | InterPro:SINA-like |
| SUPFAM:SSF49599 | SUPFAM:SSF57850 | EnsemblPlantsGene:Solyc03g034450.2 | EnsemblPlants:Solyc03g034450.2.1 | InterPro:TRAF-like | UniParc:UPI0002767DA2 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | SEG:seg | : | : |
Description
E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:K4BFW5]
Coordinates
chr3:+:6402658..6406087
Molecular Weight (calculated)
44617.0 Da
IEP (calculated)
4.802
GRAVY (calculated)
-0.685
Length
392 amino acids
Sequence
(BLAST)
(BLAST)
001: MIRVNHSSSS EEEEEMARFS VGREEDDNDE GPSNPTRRPE PKRRRTTAGT FSCSVVIRQQ EEEEERERER ERERERVVEE EEEEEEEEEE DWESESESEG
101: NFRLSGDRRL PVRESEVARE NRAISGEDPD QNLEGSRGNG SISVMLSDPD VLDCPICLEH LSVPVFQCEN GHIACASCCT KIANKCPSCC WPIGYNRCRA
201: LEKVLESVKV SCVNKMYGCK EILSYSKKTD HENACIYVPC FCPSHGCDFL GTSTNVYAHF RDKHASSAEH IFFNAVHPIH IEKDQSYKIL QMRTEGILFI
301: INHASDRVGS AFNIICVGPA RQKRRFSYKL VVTDGESSFK LESVAESMPN WSESSPLKKF LVVPRDVVNS SAPLKLNVFI EEKEYVCNGC RC
101: NFRLSGDRRL PVRESEVARE NRAISGEDPD QNLEGSRGNG SISVMLSDPD VLDCPICLEH LSVPVFQCEN GHIACASCCT KIANKCPSCC WPIGYNRCRA
201: LEKVLESVKV SCVNKMYGCK EILSYSKKTD HENACIYVPC FCPSHGCDFL GTSTNVYAHF RDKHASSAEH IFFNAVHPIH IEKDQSYKIL QMRTEGILFI
301: INHASDRVGS AFNIICVGPA RQKRRFSYKL VVTDGESSFK LESVAESMPN WSESSPLKKF LVVPRDVVNS SAPLKLNVFI EEKEYVCNGC RC
001: MARFSVCGGD DGEGPSNNNH QSRKRQRLPS IDENEEDAET SDAGSSGEED EDETQNQGMR PESEDRGSTS DDSDREVVIE ERRFGKFVNS QSSSSSKDSP
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS
Arabidopsis Description
E3 ubiquitin-protein ligase SINA-like 10 [Source:UniProtKB/Swiss-Prot;Acc:Q84K34]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.