CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER91893
EES03677
EES05173
KXG29172
OQU84058

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G37890.1	EES03677	AT2G27580.1	21798944
AT5G37890.1	EES05173	AT2G27580.1	21798944
AT5G37890.1	EER91893	AT5G65940.1	21798944
AT5G37890.1	KXG29172	AT5G65940.1	21798944
AT5G37890.1	OQU84058	AT5G65940.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU77414	Sorghum	mitochondrion, nucleus	30.51	38.7
OQU77422	Sorghum	cytosol	23.61	37.06
OQU77425	Sorghum	nucleus	30.73	36.7
EES17728	Sorghum	cytosol, mitochondrion, nucleus	25.84	35.47
KXG21322	Sorghum	nucleus	28.95	34.76
EES17731	Sorghum	nucleus	26.73	34.68
KXG32008	Sorghum	cytosol, nucleus, plastid	19.38	32.71
CDY11709	Canola	nucleus	11.36	30.91
KXG37942	Sorghum	cytosol, nucleus, plastid	17.37	29.32
TraesCS1D01G102900.1	Wheat	nucleus	24.5	28.8
KXG32009	Sorghum	nucleus	18.71	28.38
CDY36209	Canola	plastid	12.03	25.59
VIT_14s0006g01870.t01	Wine grape	cytosol	11.14	25.0
CDY47873	Canola	nucleus	18.04	25.0
Bra025434.1-P	Field mustard	nucleus	15.81	25.0
Bra028395.1-P	Field mustard	nucleus	17.82	24.69
KRH42263	Soybean	nucleus	17.37	24.38
CDY27008	Canola	nucleus	17.82	24.32
CDY52473	Canola	nucleus	15.37	24.3
KXG37941	Sorghum	cytosol	15.14	24.29
KXG32011	Sorghum	cytosol	13.14	24.28
AT5G37870.1	Thale cress	nucleus	14.92	23.84
KRH58384	Soybean	nucleus	16.93	23.75
KXG32010	Sorghum	extracellular	12.92	23.67
CDX99687	Canola	nucleus	14.7	23.32
KXG32014	Sorghum	nucleus	11.36	23.18
CDY12498	Canola	nucleus	14.03	23.16
EES00387	Sorghum	nucleus	16.26	22.88
Solyc03g036460.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	11.14	22.62
Bra018266.1-P	Field mustard	plastid	14.48	22.49
CDY10787	Canola	plastid	14.48	22.49
AT1G66630.1	Thale cress	cytosol	14.92	22.11
AT5G37910.1	Thale cress	nucleus	13.59	22.1
CDY25763	Canola	nucleus	13.36	22.06
Bra012354.1-P	Field mustard	cytosol	13.36	22.06
AT1G66620.1	Thale cress	nucleus	15.37	22.04
Bra000425.1-P	Field mustard	nucleus	13.81	21.91
AT5G37930.1	Thale cress	nucleus	16.93	21.78
AT5G37890.1	Thale cress	nucleus	13.81	21.68
CDY01699	Canola	nucleus, plastid	13.59	21.63
AT1G66650.1	Thale cress	nucleus	15.81	21.58
Bra022858.1-P	Field mustard	nucleus	14.48	21.38
CDY70665	Canola	nucleus	15.37	21.3
OQU78944	Sorghum	nucleus	15.37	21.17
CDX95911	Canola	cytosol, nucleus, plastid	13.81	21.09
CDY01756	Canola	cytosol, nucleus, plastid	13.81	20.88
Bra004401.1-P	Field mustard	cytosol, mitochondrion, nucleus	12.47	20.82
KXG32085	Sorghum	nucleus	10.47	20.8
AT1G66660.2	Thale cress	nucleus	16.04	20.69
OQU86453	Sorghum	cytosol	9.8	20.56
Bra004176.1-P	Field mustard	nucleus	15.37	20.47
CDX96138	Canola	nucleus	15.37	20.29
Bra019710.1-P	Field mustard	nucleus	15.37	20.18
PGSC0003DMT400043047	Potato	cytosol	8.24	20.11
Bra004174.1-P	Field mustard	nucleus	15.59	19.83
CDX96140	Canola	cytosol, nucleus, plastid	15.37	19.77
OQU86460	Sorghum	nucleus	14.7	19.76
CDY01695	Canola	nucleus	13.59	19.74
Solyc03g034460.2.1	Tomato	nucleus	15.81	19.72
CDX83363	Canola	cytosol, nucleus, plasma membrane	7.8	19.55
CDY36211	Canola	nucleus	15.59	19.39
Bra004402.1-P	Field mustard	nucleus	13.59	19.24
Solyc03g042550.1.1	Tomato	nucleus	15.37	19.17
PGSC0003DMT400043050	Potato	nucleus	16.26	19.16
AT1G66610.1	Thale cress	nucleus	15.14	18.58
OQU86439	Sorghum	cytosol, mitochondrion, plastid	10.91	18.42
EES02573	Sorghum	cytosol	14.25	18.34
AT5G37900.1	Thale cress	nucleus	9.8	18.26
Solyc03g034450.2.1	Tomato	nucleus	15.81	18.11
OQU86434	Sorghum	endoplasmic reticulum, plasma membrane	13.14	18.1
KXG32028	Sorghum	plastid	13.36	17.86
Solyc03g042520.1.1	Tomato	nucleus	12.25	17.74
EES02178	Sorghum	cytosol, nucleus, peroxisome	11.58	16.94
KXG32019	Sorghum	nucleus, plastid	14.03	16.94
EER92255	Sorghum	nucleus	11.36	16.89
AT5G62800.1	Thale cress	nucleus	12.92	16.67
EES06707	Sorghum	nucleus	12.69	16.57
OQU84285	Sorghum	cytosol	11.14	16.08
EER97677	Sorghum	cytosol	10.69	15.89
EES19270	Sorghum	cytosol, nucleus, peroxisome	12.47	15.86
EES02574	Sorghum	nucleus	15.37	15.4
CDY01758	Canola	cytosol	11.8	12.13
KXG22272	Sorghum	cytosol	2.45	10.78
KXG30435	Sorghum	cytosol	2.45	10.78
KXG19745	Sorghum	extracellular	2.23	10.42
CDY01757	Canola	cytosol	1.11	9.43

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	InterPro:7-in-absentia-prot_TRAF-dom	UniProt:C5Z074	EnsemblPlants:EES17735	ProteinID:EES17735
ProteinID:EES17735.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0006511	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	GO:GO:0046872	GO:GO:0061630	InterPro:IPR001841	InterPro:IPR008974
InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145	PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315
PANTHER:PTHR10315:SF35	InterPro:SINA-like	EnsemblPlantsGene:SORBI_3009G047900	SUPFAM:SSF49599	InterPro:TRAF-like	UniParc:UPI0001A887D0
RefSeq:XP_002439305.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:

Description

hypothetical protein

Coordinates

chr9:+:4530004..4531726

Molecular Weight (calculated)

49159.9 Da

IEP (calculated)

6.124

GRAVY (calculated)

-0.529

Length

449 amino acids

Sequence
(BLAST)

001: MGDVRRPILY SSQRRWRTWS SVAERGESSL SRKRARSRPP PPRLPLRYYY SDDVVVDDGS HGRSHDDDYG EEEEDEEQIR TEDDRYPSRG NVSSGADDAA
101: EAGGAVEEQL PPEDEDSGDD DRPLSSVVAR AHTLVHRRSI STAPASMPAP APPESSPTSS SSSDSSSVIK NVTVENSSAF DCSICYLPLK SPIFQCPVGH
201: VVCSPCHDKL RQATNCHVCR VPIPGGYFRC NAMEKVVDSI RVPCPHAAHG CAERMAYHDR DGHARTCAHK PCHCPGEGCG FSGSVQTTLL EHFAAVHGWP
301: CSAGTATGMS GFVVSLRKGF NVVVVTAGAD DCGTTTTTTE QQYTLVLNVE QAAPVCNTIT AFCIHPSHTG TVTVRLSYYR WYRWWRLDSD CCHRRQYAQS
401: SQLDVVCTDL SNGMPGPSSC FPLLVPRWSS PGGEDDEDIR VTVNYIRGN

Best Arabidopsis Sequence Match ( AT1G66620.1 )
(BLAST)

001: MSGEASTSRR KRQRVPSSVE SVENGGGDAV ARSGTLFELD LLDCPICCHA LTSPIFQCDN GHIACSSCCT KLRNKCPSCA LPIGNFRSRI MERVVEAVMV
101: TCPNVKHGCT EKFSYGKELI HEKDCRFALC YCPAPNCNYS GVYKDLYSHF YVNHYDTWNQ IGCGNFAGAW LRISEKILVL QYGQGPLIAV QCFKETQGMY
201: VTVNCIAPCA PGVGELSFEL SYKMPMGGNS TMMFKSEEMN RIQKVSFQTP EKDFMLVPYY FLGDFSTLKM EICIRKLKKD EEEADEDEES EEEEDDDDDD
301: DDDDEEEDAD EEE

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6H3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.