Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G66620.1 | Thale cress | nucleus | 51.49 | 49.84 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 51.82 | 44.99 |
| Bra004174.1-P | Field mustard | nucleus | 51.16 | 43.91 |
| AT1G66610.1 | Thale cress | nucleus | 50.49 | 41.8 |
| AT5G37910.1 | Thale cress | nucleus | 37.95 | 41.67 |
| HORVU3Hr1G005260.1 | Barley | cytosol | 12.21 | 40.66 |
| AT5G37870.1 | Thale cress | nucleus | 37.29 | 40.21 |
| AT5G37900.1 | Thale cress | nucleus | 31.02 | 39.0 |
| AT5G37890.1 | Thale cress | nucleus | 33.0 | 34.97 |
| AT5G37930.1 | Thale cress | nucleus | 39.27 | 34.1 |
| TraesCS3D01G028800.1 | Wheat | nucleus | 22.44 | 31.78 |
| AT1G66650.1 | Thale cress | nucleus | 32.01 | 29.48 |
| AT1G66660.2 | Thale cress | nucleus | 33.66 | 29.31 |
| HORVU3Hr1G004860.1 | Barley | cytosol | 24.09 | 28.97 |
| KXG32008 | Sorghum | cytosol, nucleus, plastid | 25.08 | 28.57 |
| KRH42263 | Soybean | nucleus | 29.37 | 27.81 |
| KRH58384 | Soybean | nucleus | 29.37 | 27.81 |
| TraesCS3D01G504900.1 | Wheat | nucleus | 24.75 | 27.37 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 19.8 | 27.15 |
| TraesCS3B01G053000.1 | Wheat | cytosol | 25.08 | 27.05 |
| AT5G62800.1 | Thale cress | nucleus | 31.02 | 27.01 |
| TraesCS3B01G033800.1 | Wheat | nucleus | 24.09 | 26.64 |
| TraesCS3D01G031300.1 | Wheat | nucleus | 24.09 | 26.64 |
| TraesCS3B01G052800.1 | Wheat | cytosol | 24.75 | 26.6 |
| TraesCS3A01G030800.1 | Wheat | cytosol | 24.09 | 26.55 |
| HORVU4Hr1G056260.1 | Barley | nucleus | 23.76 | 26.18 |
| TraesCS3A01G031100.1 | Wheat | cytosol | 23.1 | 26.02 |
| TraesCS3B01G032100.1 | Wheat | cytosol | 24.09 | 25.7 |
| TraesCS3B01G053400.1 | Wheat | cytosol, nucleus, plastid | 24.75 | 25.6 |
| TraesCS3A01G048300.1 | Wheat | nucleus | 23.1 | 25.55 |
| TraesCS3B01G050100.1 | Wheat | cytosol | 23.1 | 25.55 |
| TraesCS3D01G029000.1 | Wheat | cytosol | 23.76 | 25.53 |
| TraesCS3B01G033700.1 | Wheat | nucleus | 24.42 | 25.34 |
| KXG32009 | Sorghum | nucleus | 24.75 | 25.34 |
| HORVU3Hr1G005320.1 | Barley | nucleus | 22.11 | 25.28 |
| TraesCS3B01G560800.1 | Wheat | nucleus | 23.1 | 25.18 |
| TraesCS3A01G030600.1 | Wheat | nucleus | 23.43 | 25.18 |
| TraesCS3B01G053500.1 | Wheat | cytosol | 23.43 | 25.18 |
| TraesCS3A01G062700.1 | Wheat | nucleus | 22.77 | 25.09 |
| TraesCS3D01G030300.1 | Wheat | nucleus | 24.75 | 25.08 |
| KXG37941 | Sorghum | cytosol | 23.1 | 25.0 |
| TraesCS3B01G031200.1 | Wheat | nucleus | 24.09 | 25.0 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 16.5 | 25.0 |
| KXG37942 | Sorghum | cytosol, nucleus, plastid | 21.78 | 24.81 |
| HORVU3Hr1G004950.1 | Barley | nucleus | 24.42 | 24.67 |
| TraesCS1A01G060800.1 | Wheat | nucleus | 24.75 | 24.43 |
| TraesCS3A01G031200.1 | Wheat | cytosol | 21.45 | 24.25 |
| TraesCS2A01G446400.1 | Wheat | cytosol, nucleus, plastid | 21.45 | 24.16 |
| TraesCS5A01G531400.2 | Wheat | nucleus | 26.07 | 23.87 |
| TraesCS4B01G363200.1 | Wheat | nucleus | 25.41 | 23.48 |
| TraesCS3B01G074800.1 | Wheat | cytosol | 21.45 | 23.47 |
| PGSC0003DMT400043047 | Potato | cytosol | 14.19 | 23.37 |
| TraesCS4D01G356400.2 | Wheat | nucleus | 25.74 | 23.21 |
| TraesCS3A01G062800.1 | Wheat | nucleus | 21.78 | 22.76 |
| PGSC0003DMT400043050 | Potato | nucleus | 28.38 | 22.57 |
| Zm00001d041049_P001 | Maize | nucleus | 24.09 | 22.32 |
| TraesCS3B01G050200.1 | Wheat | nucleus | 18.15 | 22.27 |
| HORVU3Hr1G004890.1 | Barley | nucleus | 21.78 | 22.0 |
| Solyc03g034460.2.1 | Tomato | nucleus | 26.07 | 21.94 |
| TraesCS3B01G050900.1 | Wheat | cytosol | 21.12 | 21.92 |
| HORVU3Hr1G004880.2 | Barley | nucleus | 24.42 | 21.83 |
| OQU78944 | Sorghum | nucleus | 23.43 | 21.78 |
| Solyc03g042550.1.1 | Tomato | nucleus | 25.74 | 21.67 |
| Solyc03g034450.2.1 | Tomato | nucleus | 27.72 | 21.43 |
| HORVU4Hr1G087120.3 | Barley | nucleus | 25.08 | 21.23 |
| TraesCS3D01G029600.1 | Wheat | nucleus | 23.43 | 21.19 |
| AT2G41980.1 | Thale cress | nucleus | 21.12 | 20.98 |
| TraesCS3B01G052700.1 | Wheat | nucleus | 17.49 | 20.95 |
| KXG32014 | Sorghum | nucleus | 15.18 | 20.91 |
| TraesCS3B01G054400.1 | Wheat | cytosol | 20.46 | 20.88 |
| TraesCS3B01G050700.1 | Wheat | nucleus | 21.12 | 20.85 |
| HORVU1Hr1G012490.3 | Barley | nucleus | 22.77 | 20.78 |
| TraesCS1D01G061700.1 | Wheat | nucleus | 24.09 | 20.74 |
| EES00387 | Sorghum | nucleus | 21.78 | 20.69 |
| TraesCS3A01G032200.1 | Wheat | nucleus | 23.1 | 20.59 |
| HORVU0Hr1G006120.2 | Barley | cytosol, nucleus, plastid | 18.81 | 20.36 |
| Solyc03g042520.1.1 | Tomato | nucleus | 20.79 | 20.32 |
| TraesCS3B01G052400.1 | Wheat | nucleus | 22.77 | 20.29 |
| TraesCS3D01G029300.1 | Wheat | nucleus | 22.77 | 20.29 |
| TraesCS3B01G028900.1 | Wheat | cytosol | 20.13 | 20.27 |
| TraesCS3A01G030100.1 | Wheat | nucleus | 19.8 | 20.2 |
| TraesCS3D01G015600.1 | Wheat | cytosol | 19.8 | 20.2 |
| AT3G58040.3 | Thale cress | cytosol | 20.46 | 20.13 |
| TraesCSU01G045900.1 | Wheat | cytosol | 19.8 | 20.07 |
| TraesCS5A01G228300.1 | Wheat | cytosol | 20.79 | 20.0 |
| HORVU2Hr1G118560.2 | Barley | nucleus | 18.15 | 19.64 |
| EES17728 | Sorghum | cytosol, mitochondrion, nucleus | 21.12 | 19.57 |
| TraesCS3B01G032300.1 | Wheat | cytosol | 12.87 | 19.5 |
| TraesCS3A01G031300.1 | Wheat | cytosol | 17.82 | 19.22 |
| AT4G27880.1 | Thale cress | nucleus | 20.46 | 18.96 |
| AT3G61790.1 | Thale cress | nucleus | 20.13 | 18.71 |
| OQU86453 | Sorghum | cytosol | 12.87 | 18.22 |
| HORVU0Hr1G006130.1 | Barley | nucleus | 19.47 | 17.88 |
| OQU77422 | Sorghum | cytosol | 16.83 | 17.83 |
| TraesCS2A01G589200.1 | Wheat | nucleus, plastid | 21.78 | 17.69 |
| EES17731 | Sorghum | nucleus | 20.13 | 17.63 |
| TraesCS2B01G594500.1 | Wheat | nucleus, plastid | 21.78 | 17.6 |
| AT5G53360.1 | Thale cress | plasma membrane | 13.53 | 17.6 |
| HORVU2Hr1G118840.1 | Barley | plastid | 21.45 | 17.52 |
| OQU77414 | Sorghum | mitochondrion, nucleus | 20.46 | 17.51 |
| TraesCS2D01G564800.1 | Wheat | nucleus, plastid | 21.45 | 17.33 |
| TraesCSU01G021700.1 | Wheat | nucleus | 20.46 | 16.99 |
| HORVU3Hr1G005270.1 | Barley | nucleus | 18.81 | 16.72 |
| TraesCS2A01G586400.1 | Wheat | nucleus | 20.13 | 16.71 |
| TraesCS2D01G600200.1 | Wheat | nucleus | 20.13 | 16.71 |
| TraesCS3B01G031100.1 | Wheat | nucleus | 21.78 | 16.3 |
| TraesCSU01G231400.1 | Wheat | nucleus | 18.48 | 16.18 |
| TraesCS3D01G029400.1 | Wheat | nucleus | 24.42 | 16.12 |
| TraesCS3A01G032100.1 | Wheat | nucleus | 24.09 | 16.01 |
| KXG21322 | Sorghum | nucleus | 19.47 | 15.78 |
| TraesCS1D01G102900.1 | Wheat | nucleus | 19.8 | 15.71 |
| TraesCS1A01G070000.1 | Wheat | plastid | 12.54 | 15.64 |
| TraesCS3B01G052300.1 | Wheat | nucleus | 23.76 | 15.52 |
| OQU77425 | Sorghum | nucleus | 19.14 | 15.43 |
| EES17735 | Sorghum | mitochondrion | 22.11 | 14.92 |
| TraesCS3D01G029700.1 | Wheat | cytosol, mitochondrion, nucleus | 12.87 | 13.68 |
| EES02574 | Sorghum | nucleus | 19.47 | 13.17 |
| AT3G13672.2 | Thale cress | nucleus | 10.23 | 12.76 |
| Os05t0152700-00 | Rice | cytosol, extracellular | 0.66 | 2.02 |
Protein Annotations
| MapMan:19.2.2.1.5.3.5 | Gene3D:3.30.40.10 | InterPro:7-in-absentia-prot_TRAF-dom | EntrezGene:842981 | ProteinID:AAG51179.1 | ProteinID:AEE34538.1 |
| ArrayExpress:AT1G66630 | EnsemblPlantsGene:AT1G66630 | RefSeq:AT1G66630 | TAIR:AT1G66630 | RefSeq:AT1G66630-TAIR-G | EnsemblPlants:AT1G66630.1 |
| TAIR:AT1G66630.1 | Unigene:At.17506 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 | GO:GO:0006511 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0046872 | GO:GO:0061630 | InterPro:IPR001841 |
| InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | RefSeq:NP_176836.1 | PFAM:PF03145 | PFscan:PS50089 |
| PFscan:PS51081 | PANTHER:PTHR10315 | PANTHER:PTHR10315:SF43 | UniProt:Q9C6H2 | InterPro:SINA-like | SUPFAM:SSF49599 |
| SUPFAM:SSF57850 | InterPro:TRAF-like | UniParc:UPI00000A0081 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH |
| SEG:seg | : | : | : | : | : |
Description
E3 ubiquitin-protein ligase SINA-like 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6H2]
Coordinates
chr1:-:24855286..24856714
Molecular Weight (calculated)
34387.1 Da
IEP (calculated)
6.845
GRAVY (calculated)
-0.342
Length
303 amino acids
Sequence
(BLAST)
(BLAST)
001: MENITNNSER SLDRPKRQRP VSMENVGGTA SGSEVARSAT LLELDLLDCP ICYHKLGAPI YQCDNGHIAC SSCCKKVKYK CPYCSLRIGF FRSRILEKIV
101: EAVVVSCPNA KYGCTEKIPY DNESESAHER VCEFTLCYCP EPECKYTGVY TDLYRHYHAE HKTDHSWFKC GEYNNAWLHV TGEKLSFLVL QEYEDGPLVV
201: VQCSMESHGI CVTVNCIAPC APGVGEFSCH LIYRNGSEKI TFESKKMNKI QKVSPENHVA NYKPIPYYLR GEASNFMSIP YYLLDEASIL KMQICIRRSG
301: EEV
101: EAVVVSCPNA KYGCTEKIPY DNESESAHER VCEFTLCYCP EPECKYTGVY TDLYRHYHAE HKTDHSWFKC GEYNNAWLHV TGEKLSFLVL QEYEDGPLVV
201: VQCSMESHGI CVTVNCIAPC APGVGEFSCH LIYRNGSEKI TFESKKMNKI QKVSPENHVA NYKPIPYYLR GEASNFMSIP YYLLDEASIL KMQICIRRSG
301: EEV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.