Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX67865 | Canola | nucleus | 95.71 | 96.59 |
| CDY25077 | Canola | nucleus | 95.4 | 96.28 |
| Bra003473.1-P | Field mustard | nucleus | 93.86 | 96.23 |
| CDX89132 | Canola | cytosol | 94.17 | 94.17 |
| CDY43950 | Canola | nucleus | 93.25 | 93.54 |
| Bra014421.1-P | Field mustard | cytosol | 91.1 | 92.81 |
| VIT_02s0025g01660.t01 | Wine grape | cytosol | 79.75 | 82.28 |
| AT5G53360.1 | Thale cress | plasma membrane | 58.59 | 81.97 |
| KRG97189 | Soybean | nucleus | 77.61 | 80.57 |
| GSMUA_Achr5P06970_001 | Banana | cytosol | 78.22 | 78.7 |
| AT4G27880.1 | Thale cress | nucleus | 76.69 | 76.45 |
| KRH68916 | Soybean | nucleus | 76.69 | 76.22 |
| AT3G58040.3 | Thale cress | cytosol | 65.34 | 69.16 |
| AT2G41980.1 | Thale cress | nucleus | 64.42 | 68.85 |
| VIT_15s0046g00400.t01 | Wine grape | cytosol | 46.93 | 56.67 |
| VIT_00s0426g00040.t01 | Wine grape | mitochondrion | 40.49 | 54.77 |
| VIT_15s0046g00390.t01 | Wine grape | nucleus | 43.56 | 52.79 |
| VIT_15s0046g00410.t01 | Wine grape | cytosol | 29.14 | 52.49 |
| AT3G13672.2 | Thale cress | nucleus | 34.97 | 46.91 |
| VIT_15s0046g00380.t01 | Wine grape | cytosol | 34.97 | 45.78 |
| VIT_00s0726g00020.t01 | Wine grape | extracellular | 15.95 | 45.22 |
| VIT_00s0663g00030.t01 | Wine grape | cytosol, extracellular, nucleus | 14.42 | 44.34 |
| AT5G37870.1 | Thale cress | nucleus | 20.25 | 23.49 |
| AT5G37910.1 | Thale cress | nucleus | 19.63 | 23.19 |
| AT5G37890.1 | Thale cress | nucleus | 19.94 | 22.73 |
| AT1G66630.1 | Thale cress | cytosol | 18.71 | 20.13 |
| AT5G37930.1 | Thale cress | nucleus | 20.86 | 19.48 |
| AT1G66650.1 | Thale cress | nucleus | 19.63 | 19.45 |
| AT5G62800.1 | Thale cress | nucleus | 20.25 | 18.97 |
| AT1G66620.1 | Thale cress | nucleus | 17.18 | 17.89 |
| AT5G37900.1 | Thale cress | nucleus | 13.19 | 17.84 |
| AT1G66660.2 | Thale cress | nucleus | 18.71 | 17.53 |
| AT1G66610.1 | Thale cress | nucleus | 19.33 | 17.21 |
Protein Annotations
| MapMan:19.2.2.1.5.3.5 | Gene3D:2.60.210.10 | Gene3D:3.30.40.10 | InterPro:7-in-absentia-prot_TRAF-dom | EntrezGene:825352 | UniProt:A0A178V9V8 |
| ProteinID:AEE80257.1 | ArrayExpress:AT3G61790 | EnsemblPlantsGene:AT3G61790 | RefSeq:AT3G61790 | TAIR:AT3G61790 | RefSeq:AT3G61790-TAIR-G |
| EnsemblPlants:AT3G61790.1 | TAIR:AT3G61790.1 | EMBL:AY084712 | Unigene:At.21009 | EMBL:BT003967 | EMBL:BT005079 |
| ProteinID:CAB71109.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 | GO:GO:0006511 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 |
| GO:GO:0016740 | GO:GO:0019538 | GO:GO:0046872 | GO:GO:0061630 | InterPro:IPR001841 | InterPro:IPR008974 |
| InterPro:IPR013010 | InterPro:IPR013083 | RefSeq:NP_567118.1 | ProteinID:OAP03117.1 | PFAM:PF03145 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PFscan:PS50089 | PFscan:PS51081 | PANTHER:PTHR10315 | PANTHER:PTHR10315:SF42 | UniProt:Q84JL3 |
| InterPro:SINA-like | SUPFAM:SSF49599 | SUPFAM:SSF57850 | InterPro:TRAF-like | UniParc:UPI000000C20C | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | SEG:seg | : | : | : |
Description
SINAT3E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178V9V8]
Coordinates
chr3:-:22871697..22873833
Molecular Weight (calculated)
36948.8 Da
IEP (calculated)
6.926
GRAVY (calculated)
-0.477
Length
326 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLDSMDCTS TMDVTDDEEI HQDRHSYASV SKHHHTNNNT TNVNAAASGL LPTTTSVHEL LECPVCTNSM YPPIHQCHNG HTLCSTCKAR VHNRCPTCRQ
101: ELGDIRCLAL EKVAESLELP CKHMSLGCPE IFPYYSKLKH ETVCNFRPYS CPYAGSECSV TGDIPFLVAH LRDDHKVDMH SGCTFNHRYV KSNPREVENA
201: TWMLTVFHCF GQYFCLHFEA FQLGMAPVYM AFLRFMGDET EARNYNYSLE VGGYGRKLIW EGTPRSVRDS HRKVRDSHDG LIIQRNMALF FSGGDRKELK
301: LRVTGRIWKE QQQSGEGGGA CIPNLS
101: ELGDIRCLAL EKVAESLELP CKHMSLGCPE IFPYYSKLKH ETVCNFRPYS CPYAGSECSV TGDIPFLVAH LRDDHKVDMH SGCTFNHRYV KSNPREVENA
201: TWMLTVFHCF GQYFCLHFEA FQLGMAPVYM AFLRFMGDET EARNYNYSLE VGGYGRKLIW EGTPRSVRDS HRKVRDSHDG LIIQRNMALF FSGGDRKELK
301: LRVTGRIWKE QQQSGEGGGA CIPNLS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.