Factsheet for VIT_15s0046g00400.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 2
nucleus 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0010g02240.t01
VIT_17s0000g07490.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G61790.1	VIT_17s0000g07490.t01	AT1G19010.1	21798944
AT3G61790.1	VIT_01s0010g02240.t01	AT3G26050.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0426g00040.t01	Wine grape	mitochondrion	79.26	88.8
VIT_15s0046g00390.t01	Wine grape	nucleus	83.7	84.01
VIT_15s0046g00410.t01	Wine grape	cytosol	51.48	76.8
VIT_00s0726g00020.t01	Wine grape	extracellular	28.89	67.83
VIT_00s0663g00030.t01	Wine grape	cytosol, extracellular, nucleus	26.3	66.98
VIT_15s0046g00380.t01	Wine grape	cytosol	54.81	59.44
Solyc03g083270.2.1	Tomato	cytosol	57.41	49.52
PGSC0003DMT400023575	Potato	cytosol	57.41	49.36
PGSC0003DMT400050427	Potato	cytosol	57.41	49.21
Solyc06g051980.2.1	Tomato	cytosol	57.41	49.21
VIT_02s0025g01660.t01	Wine grape	cytosol	57.41	49.05
KRG97189	Soybean	nucleus	57.04	49.04
Solyc10g009420.2.1	Tomato	nucleus	56.3	48.1
GSMUA_Achr6P22600_001	Banana	cytosol	55.56	47.92
Bra003473.1-P	Field mustard	nucleus	56.3	47.8
PGSC0003DMT400018049	Potato	nucleus	58.89	47.75
Solyc05g050580.2.1	Tomato	nucleus	58.52	47.73
VIT_16s0098g01850.t01	Wine grape	cytosol	57.78	47.71
PGSC0003DMT400048586	Potato	mitochondrion	56.3	47.35
Bra010392.1-P	Field mustard	nucleus	55.93	47.19
CDY14268	Canola	nucleus	55.93	47.19
CDY25077	Canola	nucleus	56.3	47.06
CDX67865	Canola	nucleus	56.3	47.06
AT3G61790.1	Thale cress	nucleus	56.67	46.93
CDX92848	Canola	nucleus	52.96	46.89
VIT_06s0004g01130.t01	Wine grape	cytosol	53.33	46.75
CDX97399	Canola	nucleus	55.56	46.73
KRH68916	Soybean	nucleus	56.67	46.65
CDX89221	Canola	nucleus	55.19	46.27
Bra026301.1-P	Field mustard	nucleus	55.19	46.27
CDY19018	Canola	nucleus	55.19	46.27
Bra014421.1-P	Field mustard	cytosol	54.81	46.25
VIT_13s0139g00150.t01	Wine grape	cytosol, nucleus, plastid	52.22	46.23
CDX89132	Canola	cytosol	55.56	46.01
Solyc01g096020.2.1	Tomato	cytosol	56.67	45.95
AT4G27880.1	Thale cress	nucleus	55.56	45.87
CDY43950	Canola	nucleus	55.19	45.85
PGSC0003DMT400000649	Potato	cytosol	56.67	45.54
VIT_08s0007g06740.t01	Wine grape	cytosol	52.59	45.08
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	53.33	41.38
VIT_14s0006g01870.t01	Wine grape	cytosol	13.33	18.0

Protein Annotations

EntrezGene:100262215	wikigene:100262215	MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom
ProteinID:CBI40555	ProteinID:CBI40555.3	UniProt:D7UCU0	EMBL:FN596755	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005618	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005975	GO:GO:0006464	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0016043	GO:GO:0016567
GO:GO:0016740	GO:GO:0016787	GO:GO:0019538	GO:GO:0030312	GO:GO:0030599	GO:GO:0042545
GO:GO:0045330	GO:GO:0045490	GO:GO:0046872	GO:GO:0061630	InterPro:IPR001841	InterPro:IPR008974
InterPro:IPR013010	InterPro:IPR013083	EntrezGene:LOC100262215	wikigene:LOC100262215	PFAM:PF03145	PFscan:PS50089
PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF34	InterPro:SINA-like	SUPFAM:SSF49599	SUPFAM:SSF57850
InterPro:TRAF-like	UniParc:UPI0001BE51F5	ArrayExpress:VIT_15s0046g00400	EnsemblPlantsGene:VIT_15s0046g00400	EnsemblPlants:VIT_15s0046g00400.t01	RefSeq:XP_003633943
RefSeq:XP_003633943.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	:	:

Description

E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:D7UCU0]

Coordinates

chr15:+:17388602..17395277

Molecular Weight (calculated)

30464.1 Da

IEP (calculated)

7.369

GRAVY (calculated)

-0.029

Length

270 amino acids

Sequence
(BLAST)

001: MGNRVADLHS LTTFQELLKC PVCFNFMPSP IYQCHNGHTL CSSCKARVLN KCPTCRHQLG DIRCLALEKM AESLQLHCKY EEFGCPEIIP YHTKLMHEDS
101: CNFRPYSCPW YGCPCSAVGD IPLLVSHLTD YHKAVMLYGC KFELEFLIED LYKCQSYKWD VTIINCFDKH FCLHAEAFLI GSTPVYMAFL SLIGNQAEAG
201: NYSYSLEIGG NGRKLTFEGI PRSIRESKRS SLESADSLIV LGGMAFSLGG ETRMPMLRVL GRIWKAQIPG

Best Arabidopsis Sequence Match ( AT2G41980.1 )
(BLAST)

001: MAPGGSALKE ALESNSTGVD YEVKMAKVEA NSKPTKSGSG SIGKFHSSNG VYELLECPVC TNLMYPPIHQ CPNGHTLCSS CKLRVQNTCP TCRYELGNIR
101: CLALEKVAES LEVPCRYQNL GCQDIFPYYS KLKHEQHCRF RSYSCPYAGS ECSVTGDIPT LVDHLKDDHK VDMHDGCTFN HRYVKSNPHE VENATWMLTV
201: FNCFGRQFCL HFEAFQLGMA PVYMAFLRFM GDENEAKKFS YSLEVGAHSR KLTWQGIPRS IRDSHRKVRD SQDGLIIPRN LALYFSGSDK EELKLRVTGR
301: IWKEE

Arabidopsis Description

SINAT1E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178VZ75]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.