Factsheet for VIT_17s0000g07490.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03382	Soybean	nucleus	39.92	40.61
KRH56999	Soybean	nucleus	39.55	40.15
Bra016529.1-P	Field mustard	nucleus	22.41	39.53
AT1G19010.1	Thale cress	nucleus	23.16	38.56
CDX96685	Canola	nucleus	22.03	37.86
Bra015888.1-P	Field mustard	nucleus	23.16	36.5
CDX83796	Canola	plastid	22.98	33.7
CDX83793	Canola	nucleus	13.94	32.46
CDX73119	Canola	nucleus	23.92	30.68
AT1G74860.1	Thale cress	nucleus	22.98	30.5
CDY45399	Canola	nucleus, plastid	22.6	29.78
VIT_14s0066g02260.t01	Wine grape	nucleus	35.22	29.59
PGSC0003DMT400062849	Potato	nucleus	32.77	29.24
Solyc06g071250.2.1	Tomato	nucleus	22.41	28.61
Solyc03g113660.2.1	Tomato	nucleus	17.89	27.14
GSMUA_Achr3P12880_001	Banana	nucleus	25.99	23.63
GSMUA_Achr3P28160_001	Banana	nucleus	25.8	19.97
Os02t0580700-01	Rice	nucleus	20.53	18.73
TraesCS6A01G198400.1	Wheat	nucleus	19.96	18.18
GSMUA_Achr9P22660_001	Banana	nucleus	24.67	18.07
TraesCS6B01G228300.1	Wheat	nucleus	19.77	18.01
TraesCS6D01G184700.1	Wheat	nucleus	19.96	17.55
Zm00001d050907_P001	Maize	nucleus	19.02	16.45
Zm00001d016980_P001	Maize	nucleus	18.08	15.34
OQU85212	Sorghum	nucleus	17.51	14.29

Protein Annotations

ArrayExpress:VIT_17s0000g07490	EMBL:FN594950	EnsemblPlants:VIT_17s0000g07490.t01	EnsemblPlantsGene:VIT_17s0000g07490	EntrezGene:100246721	EntrezGene:LOC100246721
ncoils:Coil	PANTHER:PTHR34778	PANTHER:PTHR34778:SF1	ProteinID:CCB43023	ProteinID:CCB43023.1	RefSeq:XP_002280572
RefSeq:XP_002280572.2	SEG:seg	TIGR:TC56416	UniParc:UPI0002108F44	UniProt:F6GSY2	wikigene:100246721
wikigene:LOC100246721	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr17:-:8423656..8438725

Molecular Weight (calculated)

59472.8 Da

IEP (calculated)

5.331

GRAVY (calculated)

-0.786

Length

531 amino acids

Sequence
(BLAST)

001: MEDSEKLTAL KKAYAETILN TAKEAAARIM VSERKALSSQ QDLFMAKEEA LRMLVRLKQM MDSKIGEAKM ISLSQQKKIE ELEAQLEEAE DIVRELREEL
101: REVQNALEKM TKKQLQALDE KSFKGNAGTE VEAPQEYKLS ASASLILPRT GSRPEPVTTS DLKNSTFNKR NEGNKCYGAN DSYMENCFVA NRDFASIVTR
201: SKEPELYRNG CTQRIRAFES SLLEGKLSLS GQVDGAMNET TIGEEEEGGE GIYMTSIPKD DNVCRMERNP DEAKEIRQED GNLYPVQAIK SFRRKRKRAV
301: RYSNKAPSST CLLDQVTETH QASDLSFSKT YHYAITNDLQ SGETPSNRTA NESQKDPESP AALKLPSDAT ETSKQSECIE VAENDAEFVK ACSARSTLNK
401: NKVLIDDTVL SRQESGSLEI SEAHNCTMDL ETANVSVVNS DLKVSVKTDV VLSQPVLKYT FRRKRKKETL GHADGNISLE KNTLKRSTDE TQNGPSEPQQ
501: ASLIPESSRD SRQVAQVARQ LISLSEKKWW Q

Best Arabidopsis Sequence Match ( AT1G74860.1 )
(BLAST)

001: MADPETLAAL KRAYADTILN TTKEAAARVM VSEKKARRYQ QELVTVRNEA LHTLVRLKQM LDSKVKETEM QSLKQQQKVE ELEAQLGEAE DIVGELRLEL
101: RVLHDELKKL TDGQKHLKKN HEENLCWNNR DAAVSVMPEV SCSHENTEAV GFCIPVEQNG SVVANGIKVP SLTRINSINR CSYKDNKDQC HYTLPSILTK
201: RRETEGLAQM IHTVDSSMAN GVLSSSVEVG DVNDGVCLHE VSSCKIVESL EMSGCADATD SISSVKDGEA PIVSPNSSQK DVGTLISLKT SPPREHENDR
301: KLEISETEAR KEEKESCENM EVSASPLCEE TPVLALSKNR CIKYTFKRKR KKEVLSNLEG DSSFEESRNM KQKTVEKDDG YLESLKPSFT SESSRDVVYA

Arabidopsis Description

At1g74860 [Source:UniProtKB/TrEMBL;Acc:Q9SSG6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.