Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G198400.1 | Wheat | nucleus | 93.71 | 97.08 |
| TraesCS6B01G228300.1 | Wheat | nucleus | 92.72 | 96.05 |
| Os02t0580700-01 | Rice | nucleus | 51.49 | 53.44 |
| Zm00001d050907_P001 | Maize | nucleus | 44.37 | 43.65 |
| Zm00001d016980_P001 | Maize | nucleus | 43.54 | 42.01 |
| OQU85212 | Sorghum | nucleus | 42.22 | 39.17 |
| PGSC0003DMT400062849 | Potato | nucleus | 22.02 | 22.35 |
| Bra015888.1-P | Field mustard | nucleus | 12.42 | 22.26 |
| Solyc03g113660.2.1 | Tomato | nucleus | 12.75 | 22.0 |
| KRH03382 | Soybean | nucleus | 18.71 | 21.65 |
| AT1G19010.1 | Thale cress | nucleus | 11.42 | 21.63 |
| KRH56999 | Soybean | nucleus | 18.54 | 21.41 |
| Bra016529.1-P | Field mustard | nucleus | 10.6 | 21.26 |
| CDX96685 | Canola | nucleus | 10.76 | 21.04 |
| VIT_17s0000g07490.t01 | Wine grape | nucleus | 17.55 | 19.96 |
| KRG93451 | Soybean | nucleus | 17.55 | 19.89 |
| GSMUA_Achr3P12880_001 | Banana | nucleus | 19.04 | 19.69 |
| KRH18547 | Soybean | nucleus | 17.38 | 19.59 |
| Solyc06g071250.2.1 | Tomato | nucleus | 13.41 | 19.47 |
| CDY45399 | Canola | nucleus, plastid | 12.58 | 18.86 |
| CDX73119 | Canola | nucleus | 12.75 | 18.6 |
| CDX83793 | Canola | nucleus | 6.95 | 18.42 |
| GSMUA_Achr3P28160_001 | Banana | nucleus | 20.53 | 18.08 |
| CDX83796 | Canola | plastid | 10.76 | 17.96 |
| AT1G74860.1 | Thale cress | nucleus | 11.76 | 17.75 |
| GSMUA_Achr9P22660_001 | Banana | nucleus | 20.53 | 17.1 |
| Solyc02g087450.2.1 | Tomato | nucleus | 15.07 | 16.46 |
| VIT_14s0066g02260.t01 | Wine grape | nucleus | 16.89 | 16.14 |
| PGSC0003DMT400003550 | Potato | nucleus | 14.74 | 16.09 |
| Solyc07g062420.1.1 | Tomato | nucleus | 5.3 | 15.17 |
| Bra025333.1-P | Field mustard | nucleus | 12.91 | 14.63 |
| CDX86434 | Canola | nucleus | 12.91 | 14.63 |
| CDX85195 | Canola | nucleus | 13.41 | 13.71 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G184700.1 | EnsemblPlantsGene:TraesCS6D01G184700 | ncoils:Coil | PANTHER:PTHR34778 | PANTHER:PTHR34778:SF2 | SEG:seg |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6D:+:235768991..235777412
Molecular Weight (calculated)
66596.4 Da
IEP (calculated)
9.629
GRAVY (calculated)
-0.775
Length
604 amino acids
Sequence
(BLAST)
(BLAST)
001: MADSQVEGLR KAYAAIMLNM AKESAARVLA AERSVAVLTG GIAAAKEDGV AALVRLKNIM EDRMKQVELQ SLAHVRKITE LQEQLHDARN TVTSLQVELQ
101: RANTELEEKR KTLAEERMNI LPTCDKIGSN KSKISRSKVH LQNRSLSSKD KNTVCRVSSD AKENGAVVNM ENLYHRGSDM PSFIARNKKR ELYRNGCTQR
201: IRALRQRGPA ADSSKQSSKE ASASNNHSKT GKSDSVRSTR QTRSTIEQIL QTKFLANCKR KRGQRSRPGY KHDSSDVHVK TEDKSSGTSD ENGCLLLLQA
301: LEHDLSPPNL FSGHSGEGLT DLKDDLLMGG KVADFNYCMA SPGPIDAHAI SNMRATRRKR SKMVRVFEAG CSESKSVPGN NLLRSTNEDT IFENGQSSER
401: IDDHSDTSAI NNASVLSDVT KILIHSSGAN NDQFQSGDSS PLVFQSTKSQ VDGEGELRAK HPDCRTPENN SAKKKEVKVD ESCNLTSDRA DHLIISSLEK
501: EQSTKAASGV SVQPEGVRCI KYTFNRRKRK NVSLNSSSLV SLADKQESLA KPETQNHLVE SPKADKQESQ AKPETQNHLV ESPKGDNQLA HVAQQLILLS
601: ELKW
101: RANTELEEKR KTLAEERMNI LPTCDKIGSN KSKISRSKVH LQNRSLSSKD KNTVCRVSSD AKENGAVVNM ENLYHRGSDM PSFIARNKKR ELYRNGCTQR
201: IRALRQRGPA ADSSKQSSKE ASASNNHSKT GKSDSVRSTR QTRSTIEQIL QTKFLANCKR KRGQRSRPGY KHDSSDVHVK TEDKSSGTSD ENGCLLLLQA
301: LEHDLSPPNL FSGHSGEGLT DLKDDLLMGG KVADFNYCMA SPGPIDAHAI SNMRATRRKR SKMVRVFEAG CSESKSVPGN NLLRSTNEDT IFENGQSSER
401: IDDHSDTSAI NNASVLSDVT KILIHSSGAN NDQFQSGDSS PLVFQSTKSQ VDGEGELRAK HPDCRTPENN SAKKKEVKVD ESCNLTSDRA DHLIISSLEK
501: EQSTKAASGV SVQPEGVRCI KYTFNRRKRK NVSLNSSSLV SLADKQESLA KPETQNHLVE SPKADKQESQ AKPETQNHLV ESPKGDNQLA HVAQQLILLS
601: ELKW
001: MTDPEKLTAL KKAYAETILN TAKEAAARVM ITERKARGYQ QELASVRDEA LRACLRLKQI YDSKVKEAEM ISLQKQQKIE ELEAQLGEAE DIVGELRTEL
101: RESRYLLEKL ANGCQTNLSK EEKAPNEAVS LEVREDSSNH ERSVVASVIK PHMSDRDLSI NRCSYKENKD PCLYTLPSIL SRCREAEVVE RNTINGDCAD
201: VESLTEARKE EAKENDIELS TTPLSPSEKQ CIKFSYKRKH NKDGSNSPEG GGSSSQDDDD DDESRSRRHK TGEKDNAYLD SFTSTEPSRD SRRVAQVARQ
301: LLPFSEKKGL QQSQCDDVP
101: RESRYLLEKL ANGCQTNLSK EEKAPNEAVS LEVREDSSNH ERSVVASVIK PHMSDRDLSI NRCSYKENKD PCLYTLPSIL SRCREAEVVE RNTINGDCAD
201: VESLTEARKE EAKENDIELS TTPLSPSEKQ CIKFSYKRKH NKDGSNSPEG GGSSSQDDDD DDESRSRRHK TGEKDNAYLD SFTSTEPSRD SRRVAQVARQ
301: LLPFSEKKGL QQSQCDDVP
Arabidopsis Description
Uncharacterized protein At1g19010 [Source:UniProtKB/TrEMBL;Acc:Q9C5J5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.