Factsheet for TraesCS6B01G228300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G198400.1	Wheat	nucleus	95.2	95.2
TraesCS6D01G184700.1	Wheat	nucleus	96.05	92.72
Os02t0580700-01	Rice	nucleus	52.32	52.41
Zm00001d050907_P001	Maize	nucleus	45.63	43.32
Zm00001d016980_P001	Maize	nucleus	44.43	41.37
OQU85212	Sorghum	nucleus	43.05	38.56
Bra015888.1-P	Field mustard	nucleus	12.86	22.26
PGSC0003DMT400062849	Potato	nucleus	21.96	21.51
AT1G19010.1	Thale cress	nucleus	11.66	21.32
KRH03382	Soybean	nucleus	18.87	21.07
Bra016529.1-P	Field mustard	nucleus	10.81	20.93
Solyc03g113660.2.1	Tomato	nucleus	12.52	20.86
KRH56999	Soybean	nucleus	18.7	20.84
CDX96685	Canola	nucleus	10.98	20.71
VIT_17s0000g07490.t01	Wine grape	nucleus	18.01	19.77
GSMUA_Achr3P12880_001	Banana	nucleus	19.38	19.35
KRG93451	Soybean	nucleus	17.67	19.32
KRH18547	Soybean	nucleus	17.67	19.22
Solyc06g071250.2.1	Tomato	nucleus	13.55	18.99
CDY45399	Canola	nucleus, plastid	13.04	18.86
CDX73119	Canola	nucleus	13.21	18.6
CDX83793	Canola	nucleus	7.03	17.98
GSMUA_Achr3P28160_001	Banana	nucleus	21.1	17.93
AT1G74860.1	Thale cress	nucleus	12.18	17.75
CDX83796	Canola	plastid	10.98	17.68
Solyc02g087450.2.1	Tomato	nucleus	15.78	16.64
GSMUA_Achr9P22660_001	Banana	nucleus	20.58	16.55
PGSC0003DMT400003550	Potato	nucleus	15.44	16.27
VIT_14s0066g02260.t01	Wine grape	nucleus	17.32	15.98
Solyc07g062420.1.1	Tomato	nucleus	5.66	15.64
Bra025333.1-P	Field mustard	nucleus	13.04	14.26
CDX86434	Canola	nucleus	13.04	14.26
CDX85195	Canola	nucleus	13.21	13.03

Protein Annotations

EnsemblPlants:TraesCS6B01G228300.1	EnsemblPlantsGene:TraesCS6B01G228300	ncoils:Coil	PANTHER:PTHR34778	PANTHER:PTHR34778:SF2	SEG:seg
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr6B:-:360411969..360422407

Molecular Weight (calculated)

64253.7 Da

IEP (calculated)

9.554

GRAVY (calculated)

-0.722

Length

583 amino acids

Sequence
(BLAST)

001: MADSQVEELR KAYAAIMLNM AKESAARVLA AERSVALLTG GIAAAKEDGV AALVRLKNIM KDRMKQVELQ SLIHVRKISE LQEQLHDARN TVASLQVELQ
101: RANTELEETR KTLAEERMNI LPTCDKIGSN KSKISRSKVH LQNRSLSSKD KNSVCHVSSD AKENGAVVNM ENLYHRGSGM PSFIARNKKC ELYRNGCTQR
201: IRALKQRGPA ADSSKQSSKE ASASNNHSKT GKSDSVRSTR QTRSTIEQIL QTKFVANCKR KRGQRSRPGY KHDSSDVHVK TEDKSSGTSD ENGCLLLLQA
301: LEHDLSPPNL FSRHSGEGLT DLKDDLLIGG KVADFNSCMA SPGPIDAYAI SNMRATRRKR SKMVRVFEAV CSESKSVPGN NLLRSTDEDT IFENGQSSER
401: IDDHSDTSAI NNASVLSDMT KNLIHSIGAN NDQFQSGDSS PLVFQSTKSQ VDGEGELRAK HPDCRTPENN SAKKKEVKVD ESCNLTSDRA DHLIISSLDK
501: EQSTKAASGV SVQPEGVRCI KYTFNRRKRK NVSLNSSSLV SLADKQESQA KPETQNHLVE SPKGDNQLAH VAQQLILLSE LKW

Best Arabidopsis Sequence Match ( AT1G19010.1 )
(BLAST)

001: MTDPEKLTAL KKAYAETILN TAKEAAARVM ITERKARGYQ QELASVRDEA LRACLRLKQI YDSKVKEAEM ISLQKQQKIE ELEAQLGEAE DIVGELRTEL
101: RESRYLLEKL ANGCQTNLSK EEKAPNEAVS LEVREDSSNH ERSVVASVIK PHMSDRDLSI NRCSYKENKD PCLYTLPSIL SRCREAEVVE RNTINGDCAD
201: VESLTEARKE EAKENDIELS TTPLSPSEKQ CIKFSYKRKH NKDGSNSPEG GGSSSQDDDD DDESRSRRHK TGEKDNAYLD SFTSTEPSRD SRRVAQVARQ
301: LLPFSEKKGL QQSQCDDVP

Arabidopsis Description

Uncharacterized protein At1g19010 [Source:UniProtKB/TrEMBL;Acc:Q9C5J5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.