Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96685 | Canola | nucleus | 91.23 | 67.31 |
| CDX83796 | Canola | plastid | 92.98 | 58.56 |
| AT1G19010.1 | Thale cress | nucleus | 64.04 | 45.77 |
| CDY45399 | Canola | nucleus, plastid | 44.74 | 25.31 |
| CDX73119 | Canola | nucleus | 45.18 | 24.88 |
| VIT_17s0000g07490.t01 | Wine grape | nucleus | 32.46 | 13.94 |
| KRH56999 | Soybean | nucleus | 29.82 | 13.0 |
| KRH03382 | Soybean | nucleus | 28.51 | 12.45 |
| Solyc03g113660.2.1 | Tomato | nucleus | 15.79 | 10.29 |
| PGSC0003DMT400062849 | Potato | nucleus | 26.75 | 10.25 |
| Solyc06g071250.2.1 | Tomato | nucleus | 18.42 | 10.1 |
| GSMUA_Achr3P12880_001 | Banana | nucleus | 23.68 | 9.25 |
| CDX86434 | Canola | nucleus | 18.86 | 8.07 |
| GSMUA_Achr3P28160_001 | Banana | nucleus | 23.25 | 7.73 |
| Os02t0580700-01 | Rice | nucleus | 19.3 | 7.56 |
| TraesCS6B01G228300.1 | Wheat | nucleus | 17.98 | 7.03 |
| TraesCS6D01G184700.1 | Wheat | nucleus | 18.42 | 6.95 |
| Zm00001d016980_P001 | Maize | nucleus | 18.86 | 6.87 |
| TraesCS6A01G198400.1 | Wheat | nucleus | 17.54 | 6.86 |
| Zm00001d050907_P001 | Maize | nucleus | 17.98 | 6.68 |
| CDX85195 | Canola | nucleus | 17.11 | 6.6 |
| GSMUA_Achr9P22660_001 | Banana | nucleus | 20.61 | 6.48 |
| OQU85212 | Sorghum | nucleus | 16.23 | 5.68 |
Protein Annotations
| EnsemblPlants:CDX83793 | EnsemblPlantsGene:GSBRNA2T00139542001 | ncoils:Coil | PANTHER:PTHR34778 | PANTHER:PTHR34778:SF1 | ProteinID:CDX83793 |
| ProteinID:CDX83793.1 | SEG:seg | UniParc:UPI0004EE432C | MapMan:35.2 | : | : |
Description
BnaC08g18520D
Coordinates
chrLK031834:-:484742..485645
Molecular Weight (calculated)
26122.2 Da
IEP (calculated)
6.178
GRAVY (calculated)
-1.175
Length
228 amino acids
Sequence
(BLAST)
(BLAST)
001: MMSLSKQQKI ELEAQLGEAE DIVGELRMEL RESRYQLEKL TNSRQSNEEE NKLSEVVSLA CEDSSNHERT VVASGIKPHS SDRDMSINRC SYKENKDPCH
101: HTLPSILTRR REAEALEKGD CPNVEEKELL TTSLSPSEKE YVQFTVRRKR KKDARSGSIS PEGRSSSSQE DESRNRRQKT GEKDNVYLDS FNTESSSRDS
201: RRVAQVARQL LPFAEKKMSQ ENQSDYVS
101: HTLPSILTRR REAEALEKGD CPNVEEKELL TTSLSPSEKE YVQFTVRRKR KKDARSGSIS PEGRSSSSQE DESRNRRQKT GEKDNVYLDS FNTESSSRDS
201: RRVAQVARQL LPFAEKKMSQ ENQSDYVS
001: MTDPEKLTAL KKAYAETILN TAKEAAARVM ITERKARGYQ QELASVRDEA LRACLRLKQI YDSKVKEAEM ISLQKQQKIE ELEAQLGEAE DIVGELRTEL
101: RESRYLLEKL ANGCQTNLSK EEKAPNEAVS LEVREDSSNH ERSVVASVIK PHMSDRDLSI NRCSYKENKD PCLYTLPSIL SRCREAEVVE RNTINGDCAD
201: VESLTEARKE EAKENDIELS TTPLSPSEKQ CIKFSYKRKH NKDGSNSPEG GGSSSQDDDD DDESRSRRHK TGEKDNAYLD SFTSTEPSRD SRRVAQVARQ
301: LLPFSEKKGL QQSQCDDVP
101: RESRYLLEKL ANGCQTNLSK EEKAPNEAVS LEVREDSSNH ERSVVASVIK PHMSDRDLSI NRCSYKENKD PCLYTLPSIL SRCREAEVVE RNTINGDCAD
201: VESLTEARKE EAKENDIELS TTPLSPSEKQ CIKFSYKRKH NKDGSNSPEG GGSSSQDDDD DDESRSRRHK TGEKDNAYLD SFTSTEPSRD SRRVAQVARQ
301: LLPFSEKKGL QQSQCDDVP
Arabidopsis Description
Uncharacterized protein At1g19010 [Source:UniProtKB/TrEMBL;Acc:Q9C5J5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.