Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra015888.1-P | Field mustard | nucleus | 23.56 | 29.08 |
| Bra016529.1-P | Field mustard | nucleus | 19.71 | 27.24 |
| AT1G19010.1 | Thale cress | nucleus | 20.43 | 26.65 |
| CDX96685 | Canola | nucleus | 19.47 | 26.21 |
| KRH56999 | Soybean | nucleus | 30.53 | 24.28 |
| AT1G74860.1 | Thale cress | nucleus | 23.32 | 24.25 |
| KRH03382 | Soybean | nucleus | 30.05 | 23.95 |
| CDY45399 | Canola | nucleus, plastid | 23.08 | 23.82 |
| CDX73119 | Canola | nucleus | 22.84 | 22.95 |
| CDX83796 | Canola | plastid | 19.95 | 22.93 |
| VIT_17s0000g07490.t01 | Wine grape | nucleus | 28.61 | 22.41 |
| Solyc07g062420.1.1 | Tomato | nucleus | 10.34 | 20.38 |
| Solyc03g113660.2.1 | Tomato | nucleus | 15.87 | 18.86 |
| CDX83793 | Canola | nucleus | 10.1 | 18.42 |
| GSMUA_Achr3P12880_001 | Banana | nucleus | 22.36 | 15.92 |
| Solyc02g087450.2.1 | Tomato | nucleus | 20.67 | 15.55 |
| Os02t0580700-01 | Rice | nucleus | 20.43 | 14.6 |
| TraesCS6A01G198400.1 | Wheat | nucleus | 18.99 | 13.55 |
| TraesCS6B01G228300.1 | Wheat | nucleus | 18.99 | 13.55 |
| TraesCS6D01G184700.1 | Wheat | nucleus | 19.47 | 13.41 |
| GSMUA_Achr3P28160_001 | Banana | nucleus | 20.67 | 12.54 |
| GSMUA_Achr9P22660_001 | Banana | nucleus | 19.95 | 11.45 |
| Zm00001d050907_P001 | Maize | nucleus | 16.59 | 11.24 |
| Zm00001d016980_P001 | Maize | nucleus | 16.59 | 11.02 |
| OQU85212 | Sorghum | nucleus | 16.35 | 10.45 |
Protein Annotations
| EnsemblPlants:Solyc06g071250.2.1 | EnsemblPlantsGene:Solyc06g071250.2 | ncoils:Coil | PANTHER:PTHR34778 | PANTHER:PTHR34778:SF1 | SEG:seg |
| UniParc:UPI000050977F | UniProt:K4C8J8 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr6:+:43834329..43839604
Molecular Weight (calculated)
46931.8 Da
IEP (calculated)
4.455
GRAVY (calculated)
-0.801
Length
416 amino acids
Sequence
(BLAST)
(BLAST)
001: MDADERLKAL EKAYTDVVLN TEKEAATRIM VSEQKAQCFQ EELQVVKEKG LMTLMKLKEM MDSKIIEAEL TSLSQQRKIE ELESQLEEAE DIVSDLRVEL
101: REVQAELEKV ASKEKEKNQS LDVGSDLRVE LREVQAELEK VTSNEKEEKQ SLDVDSTNPR ELKKDNTVVL PPESQDDSVT TSNMEVDSMN QKTKGYHSCH
201: TKVNPGNCFV ASSDLSLTGK ALELHQNGHT QIIHAAEGNL SDREIIQNET FSEHSLKLEN MTTNNFLTDD STVARGNAPS EDSSEMAQGL STGKGEQVME
301: MGYAESSDNK PQSIEASGVH YEIDEHEDLM GKMDLSEEDI ENVCNQLFFI KDLCNQLLKS ESSVTDVNNR VPSQPINDRV FKYTYKRKRK RELLSVSDEK
401: ASIAKSSQTK NMCETR
101: REVQAELEKV ASKEKEKNQS LDVGSDLRVE LREVQAELEK VTSNEKEEKQ SLDVDSTNPR ELKKDNTVVL PPESQDDSVT TSNMEVDSMN QKTKGYHSCH
201: TKVNPGNCFV ASSDLSLTGK ALELHQNGHT QIIHAAEGNL SDREIIQNET FSEHSLKLEN MTTNNFLTDD STVARGNAPS EDSSEMAQGL STGKGEQVME
301: MGYAESSDNK PQSIEASGVH YEIDEHEDLM GKMDLSEEDI ENVCNQLFFI KDLCNQLLKS ESSVTDVNNR VPSQPINDRV FKYTYKRKRK RELLSVSDEK
401: ASIAKSSQTK NMCETR
001: MADPETLAAL KRAYADTILN TTKEAAARVM VSEKKARRYQ QELVTVRNEA LHTLVRLKQM LDSKVKETEM QSLKQQQKVE ELEAQLGEAE DIVGELRLEL
101: RVLHDELKKL TDGQKHLKKN HEENLCWNNR DAAVSVMPEV SCSHENTEAV GFCIPVEQNG SVVANGIKVP SLTRINSINR CSYKDNKDQC HYTLPSILTK
201: RRETEGLAQM IHTVDSSMAN GVLSSSVEVG DVNDGVCLHE VSSCKIVESL EMSGCADATD SISSVKDGEA PIVSPNSSQK DVGTLISLKT SPPREHENDR
301: KLEISETEAR KEEKESCENM EVSASPLCEE TPVLALSKNR CIKYTFKRKR KKEVLSNLEG DSSFEESRNM KQKTVEKDDG YLESLKPSFT SESSRDVVYA
101: RVLHDELKKL TDGQKHLKKN HEENLCWNNR DAAVSVMPEV SCSHENTEAV GFCIPVEQNG SVVANGIKVP SLTRINSINR CSYKDNKDQC HYTLPSILTK
201: RRETEGLAQM IHTVDSSMAN GVLSSSVEVG DVNDGVCLHE VSSCKIVESL EMSGCADATD SISSVKDGEA PIVSPNSSQK DVGTLISLKT SPPREHENDR
301: KLEISETEAR KEEKESCENM EVSASPLCEE TPVLALSKNR CIKYTFKRKR KKEVLSNLEG DSSFEESRNM KQKTVEKDDG YLESLKPSFT SESSRDVVYA
Arabidopsis Description
At1g74860 [Source:UniProtKB/TrEMBL;Acc:Q9SSG6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.