Factsheet for GSMUA_Achr3P12880_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra016529.1-P	Field mustard	nucleus	14.9	28.9
CDX96685	Canola	nucleus	14.9	28.16
GSMUA_Achr3P28160_001	Banana	nucleus	31.51	26.82
Bra015888.1-P	Field mustard	nucleus	15.07	26.11
VIT_17s0000g07490.t01	Wine grape	nucleus	23.63	25.99
VIT_14s0066g02260.t01	Wine grape	nucleus	27.57	25.47
KRH03382	Soybean	nucleus	22.43	25.1
KRH56999	Soybean	nucleus	22.26	24.86
CDX83796	Canola	plastid	15.24	24.59
KRG93451	Soybean	nucleus	22.09	24.2
AT1G19010.1	Thale cress	nucleus	13.01	23.82
KRH18547	Soybean	nucleus	21.75	23.69
CDX83793	Canola	nucleus	9.25	23.68
GSMUA_Achr9P22660_001	Banana	nucleus	29.11	23.45
Solyc03g113660.2.1	Tomato	nucleus	13.53	22.57
PGSC0003DMT400062849	Potato	nucleus	22.95	22.52
Solyc06g071250.2.1	Tomato	nucleus	15.92	22.36
CDX73119	Canola	nucleus	15.75	22.22
CDY45399	Canola	nucleus, plastid	15.24	22.08
AT1G74860.1	Thale cress	nucleus	14.04	20.5
TraesCS6A01G198400.1	Wheat	nucleus	19.35	19.38
TraesCS6B01G228300.1	Wheat	nucleus	19.35	19.38
Os02t0580700-01	Rice	nucleus	19.18	19.24
Zm00001d050907_P001	Maize	nucleus	20.21	19.22
PGSC0003DMT400003550	Potato	nucleus	18.15	19.17
TraesCS6D01G184700.1	Wheat	nucleus	19.69	19.04
Solyc07g062420.1.1	Tomato	nucleus	6.68	18.48
Solyc02g087450.2.1	Tomato	nucleus	17.47	18.44
Zm00001d016980_P001	Maize	nucleus	19.35	18.05
CDX86434	Canola	nucleus	15.92	17.45
Bra025333.1-P	Field mustard	nucleus	15.92	17.45
OQU85212	Sorghum	nucleus	19.18	17.2
CDX85195	Canola	nucleus	15.75	15.57

Protein Annotations

EnsemblPlants:GSMUA_Achr3P12880_001	EnsemblPlants:GSMUA_Achr3T12880_001	EnsemblPlantsGene:GSMUA_Achr3G12880_001	ncoils:Coil	PANTHER:PTHR34778	SEG:seg
UniParc:UPI000294E69E	UniProt:M0SE55	MapMan:35.2	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G12880_001]

Coordinates

chr3:+:9509799..9516314

Molecular Weight (calculated)

65309.9 Da

IEP (calculated)

7.670

GRAVY (calculated)

-0.776

Length

584 amino acids

Sequence
(BLAST)

001: MVALKRAYAD VILNTAKESA ARILAADRRV VQSQHSLSLA KEESLAMLLR LKSIMDAKIK DAENVNLSQA RRIQELEVQL SEAKETIHHL NSELTKVSSE
101: VESEKSYQIE SLEEQRSHGC VIVNRDDCQE GRHTSVSAPC SQVGAICSPN SDFNVTTSKQ RTADKHRCFA KYTAQNEPSK EMVASDDSAG SPDLVSIILR
201: NKELDLYRNG CTQRVRAFEQ NLLTEREPCA QMHDQFFNAK REAVTCDDDT AERHRTRDLA LSGRLVVQVL EPLESEEVGQ QGNMCENDHT ANISCQHPSE
301: KPGVRKPVTS SGAYHELQDH EQLDISDSKV AGQNNMPRSC EKERHDGEGA FSCLVEASRG DHRTSKDGNM KLNKLSDHVI SGSLNTSRVM TRRTMKLCGV
401: NGANGCGGST TSVSINSSQE NIKKELVTMN TFDMKDSSLL VADVKNDTID TQLEKESMLK TLDHKMAKKI NTSDLKDNHE RIGVPLTSYD SKDERSCGLS
501: GLPPEVGKDR IVKYTFRRTR KRRSPDSNND DVFLEKINMP KRKARKENAS LEPPKPNLVK DSTRDSRKIA QVARQLIALS EKRW

Best Arabidopsis Sequence Match ( AT1G19010.1 )
(BLAST)

001: MTDPEKLTAL KKAYAETILN TAKEAAARVM ITERKARGYQ QELASVRDEA LRACLRLKQI YDSKVKEAEM ISLQKQQKIE ELEAQLGEAE DIVGELRTEL
101: RESRYLLEKL ANGCQTNLSK EEKAPNEAVS LEVREDSSNH ERSVVASVIK PHMSDRDLSI NRCSYKENKD PCLYTLPSIL SRCREAEVVE RNTINGDCAD
201: VESLTEARKE EAKENDIELS TTPLSPSEKQ CIKFSYKRKH NKDGSNSPEG GGSSSQDDDD DDESRSRRHK TGEKDNAYLD SFTSTEPSRD SRRVAQVARQ
301: LLPFSEKKGL QQSQCDDVP

Arabidopsis Description

Uncharacterized protein At1g19010 [Source:UniProtKB/TrEMBL;Acc:Q9C5J5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.