Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g113660.2.1 | Tomato | nucleus | 44.03 | 74.86 |
| Bra015888.1-P | Field mustard | nucleus | 20.0 | 35.31 |
| Bra016529.1-P | Field mustard | nucleus | 17.82 | 35.22 |
| KRH03382 | Soybean | nucleus | 30.76 | 35.06 |
| KRH56999 | Soybean | nucleus | 30.42 | 34.61 |
| CDX96685 | Canola | nucleus | 17.65 | 33.98 |
| AT1G19010.1 | Thale cress | nucleus | 17.65 | 32.92 |
| VIT_17s0000g07490.t01 | Wine grape | nucleus | 29.24 | 32.77 |
| CDX83796 | Canola | plastid | 18.15 | 29.83 |
| AT1G74860.1 | Thale cress | nucleus | 20.0 | 29.75 |
| CDY45399 | Canola | nucleus, plastid | 19.83 | 29.28 |
| CDX73119 | Canola | nucleus | 20.34 | 29.23 |
| CDX83793 | Canola | nucleus | 10.25 | 26.75 |
| GSMUA_Achr3P12880_001 | Banana | nucleus | 22.52 | 22.95 |
| TraesCS6A01G198400.1 | Wheat | nucleus | 22.18 | 22.64 |
| Os02t0580700-01 | Rice | nucleus | 21.85 | 22.34 |
| TraesCS6D01G184700.1 | Wheat | nucleus | 22.35 | 22.02 |
| TraesCS6B01G228300.1 | Wheat | nucleus | 21.51 | 21.96 |
| Zm00001d050907_P001 | Maize | nucleus | 21.68 | 21.01 |
| PGSC0003DMT400003550 | Potato | nucleus | 19.16 | 20.61 |
| Zm00001d016980_P001 | Maize | nucleus | 20.84 | 19.81 |
| GSMUA_Achr3P28160_001 | Banana | nucleus | 22.52 | 19.53 |
| OQU85212 | Sorghum | nucleus | 20.17 | 18.43 |
| GSMUA_Achr9P22660_001 | Banana | nucleus | 21.34 | 17.52 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400062849 | EnsemblPlantsGene:PGSC0003DMG400024465 | EntrezGene:102603481 | ncoils:Coil | PANTHER:PTHR34778 | PANTHER:PTHR34778:SF1 |
| PGSC:PGSC0003DMG400024465 | SEG:seg | UniParc:UPI000294AB32 | UniProt:M1C9M3 | MapMan:35.2 | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400024465]
Coordinates
chr3:+:53553391..53563355
Molecular Weight (calculated)
66246.8 Da
IEP (calculated)
6.352
GRAVY (calculated)
-0.867
Length
595 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTDERLTAL KRAYADIILN TAKEAAARIM SSEQKAVRYK HELQVAKEEG LGMLLRLKQM MDSKISEAEL TSLSQQRKIE ELEAQLQEAE DIVSDLRVEL
101: REVQADLERV TSCKEKGVRN LEDIDTAPPG KLHEENRVVL PHESQESSMT ISNIEVTNMK QKNQGHQSCS KMVQLGKPSI SGPDLPSIIL RSKVPELYRN
201: GCTQRIRACE GNLLDGDLSV SKGVEKTKNE NGNAVDEGEG IYSSPINKID DVVNPQENIQ QADDLLSSWH LLTSFRRKRR RAMRNRKAGY PSPGSSPDHF
301: LNIDKTSNTG SLTAHSSLAS DGAPDEDPSH MGYGLSIGKD EPDMKLGFTE MHGNESQISK SSRRKRRRAM RNRKADYPSP RSSPDHFLNI DKTSNAGVLI
401: AHSSPDRDCD PGEDPSQMSD SLLIEKTEPG MKLGFTEISG NEPQSAETSS VLNSTVSDEL VMAKMDSPRQ ESRSLENLAV HIDRPDFVTV SSQPGNSLSK
501: IADVYGEVPS QTPKDRVIKY TFQRKRKREQ LSVSEENAPI EKSSPKELNG EKLNGHVEPK MSNSATESSR DSRRMAQVAR QRVEKEGSKV LQQQE
101: REVQADLERV TSCKEKGVRN LEDIDTAPPG KLHEENRVVL PHESQESSMT ISNIEVTNMK QKNQGHQSCS KMVQLGKPSI SGPDLPSIIL RSKVPELYRN
201: GCTQRIRACE GNLLDGDLSV SKGVEKTKNE NGNAVDEGEG IYSSPINKID DVVNPQENIQ QADDLLSSWH LLTSFRRKRR RAMRNRKAGY PSPGSSPDHF
301: LNIDKTSNTG SLTAHSSLAS DGAPDEDPSH MGYGLSIGKD EPDMKLGFTE MHGNESQISK SSRRKRRRAM RNRKADYPSP RSSPDHFLNI DKTSNAGVLI
401: AHSSPDRDCD PGEDPSQMSD SLLIEKTEPG MKLGFTEISG NEPQSAETSS VLNSTVSDEL VMAKMDSPRQ ESRSLENLAV HIDRPDFVTV SSQPGNSLSK
501: IADVYGEVPS QTPKDRVIKY TFQRKRKREQ LSVSEENAPI EKSSPKELNG EKLNGHVEPK MSNSATESSR DSRRMAQVAR QRVEKEGSKV LQQQE
001: MADPETLAAL KRAYADTILN TTKEAAARVM VSEKKARRYQ QELVTVRNEA LHTLVRLKQM LDSKVKETEM QSLKQQQKVE ELEAQLGEAE DIVGELRLEL
101: RVLHDELKKL TDGQKHLKKN HEENLCWNNR DAAVSVMPEV SCSHENTEAV GFCIPVEQNG SVVANGIKVP SLTRINSINR CSYKDNKDQC HYTLPSILTK
201: RRETEGLAQM IHTVDSSMAN GVLSSSVEVG DVNDGVCLHE VSSCKIVESL EMSGCADATD SISSVKDGEA PIVSPNSSQK DVGTLISLKT SPPREHENDR
301: KLEISETEAR KEEKESCENM EVSASPLCEE TPVLALSKNR CIKYTFKRKR KKEVLSNLEG DSSFEESRNM KQKTVEKDDG YLESLKPSFT SESSRDVVYA
101: RVLHDELKKL TDGQKHLKKN HEENLCWNNR DAAVSVMPEV SCSHENTEAV GFCIPVEQNG SVVANGIKVP SLTRINSINR CSYKDNKDQC HYTLPSILTK
201: RRETEGLAQM IHTVDSSMAN GVLSSSVEVG DVNDGVCLHE VSSCKIVESL EMSGCADATD SISSVKDGEA PIVSPNSSQK DVGTLISLKT SPPREHENDR
301: KLEISETEAR KEEKESCENM EVSASPLCEE TPVLALSKNR CIKYTFKRKR KKEVLSNLEG DSSFEESRNM KQKTVEKDDG YLESLKPSFT SESSRDVVYA
Arabidopsis Description
At1g74860 [Source:UniProtKB/TrEMBL;Acc:Q9SSG6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.