CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra015888.1-P	Field mustard	nucleus	72.22	88.72
CDY45399	Canola	nucleus, plastid	77.29	79.4
CDX96685	Canola	nucleus	36.96	49.51
AT1G74860.1	Thale cress	nucleus	47.83	49.5
CDX83793	Canola	nucleus	24.88	45.18
CDX83796	Canola	plastid	39.37	45.03
KRH56999	Soybean	nucleus	32.13	25.43
KRH03382	Soybean	nucleus	31.4	24.9
VIT_17s0000g07490.t01	Wine grape	nucleus	30.68	23.92
Solyc06g071250.2.1	Tomato	nucleus	22.95	22.84
PGSC0003DMT400062849	Potato	nucleus	29.23	20.34
GSMUA_Achr3P12880_001	Banana	nucleus	22.22	15.75
CDX86434	Canola	nucleus	19.57	15.2
GSMUA_Achr3P28160_001	Banana	nucleus	25.12	15.16
Solyc03g113660.2.1	Tomato	nucleus	12.08	14.29
GSMUA_Achr9P22660_001	Banana	nucleus	23.43	13.38
TraesCS6B01G228300.1	Wheat	nucleus	18.6	13.21
TraesCS6A01G198400.1	Wheat	nucleus	18.36	13.04
TraesCS6D01G184700.1	Wheat	nucleus	18.6	12.75
CDX85195	Canola	nucleus	18.12	12.69
Zm00001d016980_P001	Maize	nucleus	19.08	12.62
Zm00001d050907_P001	Maize	nucleus	17.87	12.05
Os02t0580700-01	Rice	nucleus	16.67	11.86
OQU85212	Sorghum	nucleus	18.36	11.67

Protein Annotations

EnsemblPlants:CDX73119	EnsemblPlantsGene:GSBRNA2T00103589001	ncoils:Coil	PANTHER:PTHR34778	PANTHER:PTHR34778:SF1	ProteinID:CDX73119
ProteinID:CDX73119.1	UniParc:UPI0004EF27A0	MapMan:35.2	:	:	:

Description

BnaC06g35670D

Coordinates

chrLK031797:+:2205977..2210396

Molecular Weight (calculated)

46361.9 Da

IEP (calculated)

9.013

GRAVY (calculated)

-0.726

Length

414 amino acids

Sequence
(BLAST)

001: MFSLTCQFST PLSVPNRQTL QVKEREEKKE PTFFAFLSSW RVFDLGRKTK KSHNRFSATA LSALMGDSET LAALKRAYAD TILNTTKEAA ARVLSSEKKT
101: RMYQQEIVTV KDEAITTLLR LKQMYDSKVK ETEEMSLKQQ QKVEELEAQL GEAEDIVGEL RMELRALHDE LNKVTNGNTS YLKGDQEVSC RKASDAAVSS
201: SHERSGAVPV EQSGSVVAYG ITNQSLARIN SIKRCSSKDS MDRCHHTLPS ILTKRREVEG CTQMIHAVDK KNMANGDGKD PMVSQNTSPK EHEQNRRTVI
301: SATEARKEEK EILASSMCEE TPVLAAASKN RCIKYTFKRK RKKEASSNLE GDSSFEESRN VKQKTGEKDD GYLESLKPSF TGESSRDSLC VAQVARQLVP
401: FSKKNSFAAE LVNQ

Best Arabidopsis Sequence Match ( AT1G74860.1 )
(BLAST)

001: MADPETLAAL KRAYADTILN TTKEAAARVM VSEKKARRYQ QELVTVRNEA LHTLVRLKQM LDSKVKETEM QSLKQQQKVE ELEAQLGEAE DIVGELRLEL
101: RVLHDELKKL TDGQKHLKKN HEENLCWNNR DAAVSVMPEV SCSHENTEAV GFCIPVEQNG SVVANGIKVP SLTRINSINR CSYKDNKDQC HYTLPSILTK
201: RRETEGLAQM IHTVDSSMAN GVLSSSVEVG DVNDGVCLHE VSSCKIVESL EMSGCADATD SISSVKDGEA PIVSPNSSQK DVGTLISLKT SPPREHENDR
301: KLEISETEAR KEEKESCENM EVSASPLCEE TPVLALSKNR CIKYTFKRKR KKEVLSNLEG DSSFEESRNM KQKTVEKDDG YLESLKPSFT SESSRDVVYA

Arabidopsis Description

At1g74860 [Source:UniProtKB/TrEMBL;Acc:Q9SSG6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.