CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d016980_P001	Maize	nucleus	80.95	84.19
Zm00001d050907_P001	Maize	nucleus	73.89	78.34
Os02t0580700-01	Rice	nucleus	44.7	50.0
TraesCS6A01G198400.1	Wheat	nucleus	38.86	43.4
TraesCS6B01G228300.1	Wheat	nucleus	38.56	43.05
TraesCS6D01G184700.1	Wheat	nucleus	39.17	42.22
Bra016529.1-P	Field mustard	nucleus	10.45	22.59
Bra015888.1-P	Field mustard	nucleus	11.52	22.26
CDX96685	Canola	nucleus	10.45	22.01
AT1G19010.1	Thale cress	nucleus	10.75	21.94
PGSC0003DMT400062849	Potato	nucleus	18.43	20.17
KRH03382	Soybean	nucleus	16.13	20.11
KRH56999	Soybean	nucleus	15.67	19.5
GSMUA_Achr3P12880_001	Banana	nucleus	17.2	19.18
KRG93451	Soybean	nucleus	15.21	18.57
KRH18547	Soybean	nucleus	15.21	18.47
CDX73119	Canola	nucleus	11.67	18.36
CDX83796	Canola	plastid	10.14	18.23
CDY45399	Canola	nucleus, plastid	11.21	18.11
PGSC0003DMT400003550	Potato	nucleus	15.36	18.08
Solyc02g087450.2.1	Tomato	nucleus	15.21	17.9
GSMUA_Achr3P28160_001	Banana	nucleus	18.59	17.64
VIT_17s0000g07490.t01	Wine grape	nucleus	14.29	17.51
Solyc03g113660.2.1	Tomato	nucleus	9.22	17.14
AT1G74860.1	Thale cress	nucleus	10.29	16.75
Solyc06g071250.2.1	Tomato	nucleus	10.45	16.35
GSMUA_Achr9P22660_001	Banana	nucleus	18.13	16.28
CDX83793	Canola	nucleus	5.68	16.23
Solyc07g062420.1.1	Tomato	nucleus	5.22	16.11
VIT_14s0066g02260.t01	Wine grape	nucleus	15.21	15.66
CDX86434	Canola	nucleus	12.14	14.82
Bra025333.1-P	Field mustard	nucleus	12.14	14.82
CDX85195	Canola	nucleus	11.67	12.86

Protein Annotations

EnsemblPlants:OQU85212	EnsemblPlantsGene:SORBI_3004G192900	EntrezGene:8055407	ncoils:Coil	PANTHER:PTHR34778	PANTHER:PTHR34778:SF2
ProteinID:OQU85212	ProteinID:OQU85212.1	RefSeq:XP_002452346.1	SEG:seg	UniParc:UPI0001A858DF	UniProt:A0A1Z5RN81
MapMan:35.2	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:54470458..54476603

Molecular Weight (calculated)

72293.2 Da

IEP (calculated)

8.536

GRAVY (calculated)

-0.822

Length

651 amino acids

Sequence
(BLAST)

001: MADSQVKFLS LYPPPPPGAV RADRGGFLVQ VEAMKKAYAG IMLNMAQESA ARVLAAERRA AALAAGLEAA KEDGVAALLR LKATMEARIK EKELETSVHV
101: KKIKELEEQL HGSQNAMASL KVELQRANTE LDLTRKTLAD ERINSLPTSN NVYSNKNASP RSKMHQKGVS LKNKKAADNS DDTCLVPINK EENEAVENLE
201: DMDRRSPDLP SLMERNKKPK FYHNGCTQRI HALKQQTQST DAFLKQNQKQ ATALNSRSKA RKNNADKNPC HTRSIMEQIL QTKFLGKFKR KRGRRSRPSY
301: KHDNSSEHEE AEYKFSDRSE SDGNGCLLLL KAFEDLSPPK MSAEHDGEAF TDQKEDLKMN RRDAELSRCT ALPELIDVLA VNSVQMKRRK RTKTVRVLED
401: DFSETKSVPE PANTQLRTSE KSMSGNQLIS EMTENRSDTP TRNSGPFLKC ATANLMHQTD AGNGQFDPEI TSSVFLQSTK SETTDYGNLV VDEQELITLN
501: NNTASLKEVN EDGSCSLASP KTDALTLSSL DKENLKASSG LPGQTLEKHD ISVGSSLNKK EHTKASSGAS MQAEGARHIK YTFNRRKRKG MSIDSTPQRA
601: VPLESSDLCS PTNKQKLHPD HVEQDHLIDS PQGDSQLAQV AEQLILLSEH V

Best Arabidopsis Sequence Match ( AT1G19010.1 )
(BLAST)

001: MTDPEKLTAL KKAYAETILN TAKEAAARVM ITERKARGYQ QELASVRDEA LRACLRLKQI YDSKVKEAEM ISLQKQQKIE ELEAQLGEAE DIVGELRTEL
101: RESRYLLEKL ANGCQTNLSK EEKAPNEAVS LEVREDSSNH ERSVVASVIK PHMSDRDLSI NRCSYKENKD PCLYTLPSIL SRCREAEVVE RNTINGDCAD
201: VESLTEARKE EAKENDIELS TTPLSPSEKQ CIKFSYKRKH NKDGSNSPEG GGSSSQDDDD DDESRSRRHK TGEKDNAYLD SFTSTEPSRD SRRVAQVARQ
301: LLPFSEKKGL QQSQCDDVP

Arabidopsis Description

Uncharacterized protein At1g19010 [Source:UniProtKB/TrEMBL;Acc:Q9C5J5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.