Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400003550 | Potato | nucleus | 89.87 | 89.87 |
| Solyc07g062420.1.1 | Tomato | nucleus | 22.78 | 59.72 |
| VIT_14s0066g02260.t01 | Wine grape | nucleus | 28.57 | 25.0 |
| KRG93451 | Soybean | nucleus | 22.06 | 22.89 |
| KRH18547 | Soybean | nucleus | 21.16 | 21.83 |
| Solyc06g071250.2.1 | Tomato | nucleus | 15.55 | 20.67 |
| Bra025333.1-P | Field mustard | nucleus | 17.36 | 18.01 |
| CDX86434 | Canola | nucleus | 17.36 | 18.01 |
| GSMUA_Achr3P12880_001 | Banana | nucleus | 18.44 | 17.47 |
| CDX85195 | Canola | nucleus | 18.44 | 17.26 |
| Os02t0580700-01 | Rice | nucleus | 17.9 | 17.01 |
| GSMUA_Achr3P28160_001 | Banana | nucleus | 20.07 | 16.18 |
| Zm00001d050907_P001 | Maize | nucleus | 17.54 | 15.8 |
| TraesCS6B01G228300.1 | Wheat | nucleus | 16.64 | 15.78 |
| GSMUA_Achr9P22660_001 | Banana | nucleus | 20.61 | 15.72 |
| Zm00001d016980_P001 | Maize | nucleus | 17.36 | 15.34 |
| TraesCS6A01G198400.1 | Wheat | nucleus | 16.09 | 15.27 |
| OQU85212 | Sorghum | nucleus | 17.9 | 15.21 |
| TraesCS6D01G184700.1 | Wheat | nucleus | 16.46 | 15.07 |
| Solyc03g113660.2.1 | Tomato | nucleus | 9.22 | 14.57 |
Protein Annotations
| EnsemblPlants:Solyc02g087450.2.1 | EnsemblPlantsGene:Solyc02g087450.2 | ncoils:Coil | PANTHER:PTHR34778 | PANTHER:PTHR34778:SF2 | SEG:seg |
| UniParc:UPI0002768104 | UniProt:K4BBQ2 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr2:-:49889896..49893348
Molecular Weight (calculated)
61206.6 Da
IEP (calculated)
9.492
GRAVY (calculated)
-0.711
Length
553 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVVKKAYAG IILNMAKEAA ARVMESEKKA LKFQQDLHST KEEALRMLLR LKLMIDAKTA EAESLSQNQQ RRIDELEAQL NEAEGLIIDL RAELHDVHEQ
101: LNEAKNKPLH HLRPHAKEVL NCRKSIMAKS NVNNSESLKF PTELGSKVCK SADMSDTALC NYSKDNLNEP EIYRNGWSAT AMSLADDRLH SGDDPSFPIK
201: VTQVTEPSGR DGEARILPSS KAIKAENLVG EEPLKGIATM QGPYTILGKR RRKARNGKTK NSSCKARSNK LMFSQRPLPA ISRCSARYLH TDTLYDSPNC
301: PSINTEKNNV AGSSFVSGKE GPQNKGLTVA VARRSIRKRR VKYLDVNFPP SLSHSSLSNQ PMRPGLQCSS FPNSKSNAAE CTVKSTKLGG EGGIEEGTGF
401: QGASSGFTVE NKKHRKFART DNDAHKEDAE LVDVSVMVEE GDGQPLLNFG VLPVESIFGD TKASEGSNES NLQGNNMTPL KYMFSRKRKK DNLSNPNENS
501: SPDCLVKKKS VEIENIDPRL QDSEALKDSP LRSKHLVQVA HQLISLSGRS WWH
101: LNEAKNKPLH HLRPHAKEVL NCRKSIMAKS NVNNSESLKF PTELGSKVCK SADMSDTALC NYSKDNLNEP EIYRNGWSAT AMSLADDRLH SGDDPSFPIK
201: VTQVTEPSGR DGEARILPSS KAIKAENLVG EEPLKGIATM QGPYTILGKR RRKARNGKTK NSSCKARSNK LMFSQRPLPA ISRCSARYLH TDTLYDSPNC
301: PSINTEKNNV AGSSFVSGKE GPQNKGLTVA VARRSIRKRR VKYLDVNFPP SLSHSSLSNQ PMRPGLQCSS FPNSKSNAAE CTVKSTKLGG EGGIEEGTGF
401: QGASSGFTVE NKKHRKFART DNDAHKEDAE LVDVSVMVEE GDGQPLLNFG VLPVESIFGD TKASEGSNES NLQGNNMTPL KYMFSRKRKK DNLSNPNENS
501: SPDCLVKKKS VEIENIDPRL QDSEALKDSP LRSKHLVQVA HQLISLSGRS WWH
001: MADPETLAAL KRAYADTILN TTKEAAARVM VSEKKARRYQ QELVTVRNEA LHTLVRLKQM LDSKVKETEM QSLKQQQKVE ELEAQLGEAE DIVGELRLEL
101: RVLHDELKKL TDGQKHLKKN HEENLCWNNR DAAVSVMPEV SCSHENTEAV GFCIPVEQNG SVVANGIKVP SLTRINSINR CSYKDNKDQC HYTLPSILTK
201: RRETEGLAQM IHTVDSSMAN GVLSSSVEVG DVNDGVCLHE VSSCKIVESL EMSGCADATD SISSVKDGEA PIVSPNSSQK DVGTLISLKT SPPREHENDR
301: KLEISETEAR KEEKESCENM EVSASPLCEE TPVLALSKNR CIKYTFKRKR KKEVLSNLEG DSSFEESRNM KQKTVEKDDG YLESLKPSFT SESSRDVVYA
101: RVLHDELKKL TDGQKHLKKN HEENLCWNNR DAAVSVMPEV SCSHENTEAV GFCIPVEQNG SVVANGIKVP SLTRINSINR CSYKDNKDQC HYTLPSILTK
201: RRETEGLAQM IHTVDSSMAN GVLSSSVEVG DVNDGVCLHE VSSCKIVESL EMSGCADATD SISSVKDGEA PIVSPNSSQK DVGTLISLKT SPPREHENDR
301: KLEISETEAR KEEKESCENM EVSASPLCEE TPVLALSKNR CIKYTFKRKR KKEVLSNLEG DSSFEESRNM KQKTVEKDDG YLESLKPSFT SESSRDVVYA
Arabidopsis Description
At1g74860 [Source:UniProtKB/TrEMBL;Acc:Q9SSG6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.