Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g087450.2.1 | Tomato | nucleus | 89.87 | 89.87 |
| Solyc07g062420.1.1 | Tomato | nucleus | 21.16 | 55.45 |
| VIT_14s0066g02260.t01 | Wine grape | nucleus | 29.66 | 25.95 |
| KRG93451 | Soybean | nucleus | 22.06 | 22.89 |
| KRH18547 | Soybean | nucleus | 21.16 | 21.83 |
| PGSC0003DMT400062849 | Potato | nucleus | 20.61 | 19.16 |
| GSMUA_Achr3P12880_001 | Banana | nucleus | 19.17 | 18.15 |
| CDX86434 | Canola | nucleus | 17.36 | 18.01 |
| Bra025333.1-P | Field mustard | nucleus | 17.36 | 18.01 |
| CDX85195 | Canola | nucleus | 18.99 | 17.77 |
| GSMUA_Achr9P22660_001 | Banana | nucleus | 21.88 | 16.69 |
| Os02t0580700-01 | Rice | nucleus | 17.54 | 16.67 |
| GSMUA_Achr3P28160_001 | Banana | nucleus | 20.61 | 16.62 |
| Zm00001d050907_P001 | Maize | nucleus | 17.72 | 15.96 |
| Zm00001d016980_P001 | Maize | nucleus | 17.72 | 15.65 |
| TraesCS6B01G228300.1 | Wheat | nucleus | 16.27 | 15.44 |
| OQU85212 | Sorghum | nucleus | 18.08 | 15.36 |
| TraesCS6A01G198400.1 | Wheat | nucleus | 15.73 | 14.92 |
| TraesCS6D01G184700.1 | Wheat | nucleus | 16.09 | 14.74 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400003550 | EnsemblPlantsGene:PGSC0003DMG400001402 | EntrezGene:102600189 | ncoils:Coil | PANTHER:PTHR34778 | PANTHER:PTHR34778:SF2 |
| PGSC:PGSC0003DMG400001402 | RefSeq:XP_006338498.1 | SEG:seg | UniParc:UPI0002951B76 | UniProt:M0ZLW6 | MapMan:35.2 |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400001402]
Coordinates
chr2:+:46586458..46590123
Molecular Weight (calculated)
61493.9 Da
IEP (calculated)
8.821
GRAVY (calculated)
-0.665
Length
553 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAVKKAYAG IILNMAKEAA ARVMASEKKA LKFQQDLHST KEEALRMLLR LKLIIDAKTT EAESLSQNQQ RRIDELEAQL NEAEGLIIDL RAELHDVHEQ
101: LNEAKNKPLH HLRPHAKEDL VCHNSIMAKS NVNNSESLKF PTELGSKVCK SADMSDTALC NYSKDNLNEP EIYKNGWCAI AMSLADERLH SGGDPSFPIK
201: VTQVTEPSGR DGEAHIAPSS KAMKAENLVG EEQLKGHDSM QRPYTFLGKR RRKARYGKTK NSFCKARCNK LVFSQRPLPA ISRCSARYLH TDTLYDSPNR
301: PSTNTERNNV VGSSFVSGKE GPQNKGLNIA VARRSIRKRR VKYLDVSYPP SLSHSSLSNQ PMRPGLQFPS FSNSKFSAAE CTVKSTKLGG EGGIEEGTSF
401: QAASLGFTVE NMICRKFACA DNDAHKDDTE LIDVSVMVEE GDDQPLLNFG VLPVESILGD TKASEGSKES NLQGNNMTPL KYTFSRKRKK DNLLNPNENS
501: SPDCSVKKKS VEIENIDPRL QDSEALKDSP LRSKHLVQVA HQLISLSGRS WWH
101: LNEAKNKPLH HLRPHAKEDL VCHNSIMAKS NVNNSESLKF PTELGSKVCK SADMSDTALC NYSKDNLNEP EIYKNGWCAI AMSLADERLH SGGDPSFPIK
201: VTQVTEPSGR DGEAHIAPSS KAMKAENLVG EEQLKGHDSM QRPYTFLGKR RRKARYGKTK NSFCKARCNK LVFSQRPLPA ISRCSARYLH TDTLYDSPNR
301: PSTNTERNNV VGSSFVSGKE GPQNKGLNIA VARRSIRKRR VKYLDVSYPP SLSHSSLSNQ PMRPGLQFPS FSNSKFSAAE CTVKSTKLGG EGGIEEGTSF
401: QAASLGFTVE NMICRKFACA DNDAHKDDTE LIDVSVMVEE GDDQPLLNFG VLPVESILGD TKASEGSKES NLQGNNMTPL KYTFSRKRKK DNLLNPNENS
501: SPDCSVKKKS VEIENIDPRL QDSEALKDSP LRSKHLVQVA HQLISLSGRS WWH
001: MADPETLAAL KRAYADTILN TTKEAAARVM VSEKKARRYQ QELVTVRNEA LHTLVRLKQM LDSKVKETEM QSLKQQQKVE ELEAQLGEAE DIVGELRLEL
101: RVLHDELKKL TDGQKHLKKN HEENLCWNNR DAAVSVMPEV SCSHENTEAV GFCIPVEQNG SVVANGIKVP SLTRINSINR CSYKDNKDQC HYTLPSILTK
201: RRETEGLAQM IHTVDSSMAN GVLSSSVEVG DVNDGVCLHE VSSCKIVESL EMSGCADATD SISSVKDGEA PIVSPNSSQK DVGTLISLKT SPPREHENDR
301: KLEISETEAR KEEKESCENM EVSASPLCEE TPVLALSKNR CIKYTFKRKR KKEVLSNLEG DSSFEESRNM KQKTVEKDDG YLESLKPSFT SESSRDVVYA
101: RVLHDELKKL TDGQKHLKKN HEENLCWNNR DAAVSVMPEV SCSHENTEAV GFCIPVEQNG SVVANGIKVP SLTRINSINR CSYKDNKDQC HYTLPSILTK
201: RRETEGLAQM IHTVDSSMAN GVLSSSVEVG DVNDGVCLHE VSSCKIVESL EMSGCADATD SISSVKDGEA PIVSPNSSQK DVGTLISLKT SPPREHENDR
301: KLEISETEAR KEEKESCENM EVSASPLCEE TPVLALSKNR CIKYTFKRKR KKEVLSNLEG DSSFEESRNM KQKTVEKDDG YLESLKPSFT SESSRDVVYA
Arabidopsis Description
At1g74860 [Source:UniProtKB/TrEMBL;Acc:Q9SSG6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.