CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH18547	Soybean	nucleus	82.93	82.46
VIT_14s0066g02260.t01	Wine grape	nucleus	33.02	27.85
KRH56999	Soybean	nucleus	26.83	27.34
KRH03382	Soybean	nucleus	25.7	26.25
Solyc07g062420.1.1	Tomato	nucleus	8.82	22.27
GSMUA_Achr3P12880_001	Banana	nucleus	24.2	22.09
PGSC0003DMT400003550	Potato	nucleus	22.89	22.06
Solyc02g087450.2.1	Tomato	nucleus	22.89	22.06
CDX86434	Canola	nucleus	18.95	18.95
Bra025333.1-P	Field mustard	nucleus	18.95	18.95
GSMUA_Achr3P28160_001	Banana	nucleus	24.02	18.66
TraesCS6A01G198400.1	Wheat	nucleus	19.32	17.67
TraesCS6B01G228300.1	Wheat	nucleus	19.32	17.67
TraesCS6D01G184700.1	Wheat	nucleus	19.89	17.55
CDX85195	Canola	nucleus	18.76	16.92
Os02t0580700-01	Rice	nucleus	18.2	16.67
Zm00001d050907_P001	Maize	nucleus	18.01	15.64
GSMUA_Achr9P22660_001	Banana	nucleus	21.01	15.45
OQU85212	Sorghum	nucleus	18.57	15.21
Zm00001d016980_P001	Maize	nucleus	17.45	14.86

Protein Annotations

EMBL:ACUP02011561	EnsemblPlants:KRG93451	EnsemblPlantsGene:GLYMA_19G0171001	EntrezGene:100809847	ncoils:Coil	PANTHER:PTHR34778
PANTHER:PTHR34778:SF2	ProteinID:KRG93449.1	ProteinID:KRG93450.1	ProteinID:KRG93451	ProteinID:KRG93451.1	ProteinID:KRG93452.1
SEG:seg	UniParc:UPI000233F487	UniProt:A0A0R0EGY8	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr19:-:1774619..1780360

Molecular Weight (calculated)

60830.4 Da

IEP (calculated)

8.376

GRAVY (calculated)

-0.758

Length

533 amino acids

Sequence
(BLAST)

001: MEGRERKSSL TSQTEPLDYP HSRFFTPMQQ QHSHEMVALK KAYADVILNT VKEAAGRVMV AERRALMFQQ ELASSKEEAL HMLMRLKQMM DAKTAEAEKA
101: SLEQQRKIDE LEAQLNEAED IVTDLRAELK LVYLELETAR NNQVQPLNGQ NEKQVVTFQE SAKPEISISS PHKELECVTS CDVANKSLTM NVLDNKCCNS
201: KQQTEQLCIY NLEDSCGHNS DFASIITRSK EPELRRNGFT QRVRALEGNL LDEKLLKQDV HNQHYGKKLG IIAKDSNGQV AKYSALTEKM EIKKHVKHHK
301: IPKRKIYSYY WSRFLSSCKI HLNDNCKSSK GVCFLPSIKL GAISKWKSKR RRHRHLGMKS FAFRSCKPSF FLKQCSSVCN NEKCCEDESG AKMKSLPPLT
401: DVEPVHRTIG VTESIQAVNK FELVEKAIEK DSELLNLEEN AAQNLTGPSS DMKVEGFDFP STDTDLEDAK AFEKNDRSAS QVNDSRPLKY TFQRKRKKES
501: LGNADQNIDS EKRTVERRVE DKQNCAIELQ NLA

Best Arabidopsis Sequence Match ( AT1G74860.1 )
(BLAST)

001: MADPETLAAL KRAYADTILN TTKEAAARVM VSEKKARRYQ QELVTVRNEA LHTLVRLKQM LDSKVKETEM QSLKQQQKVE ELEAQLGEAE DIVGELRLEL
101: RVLHDELKKL TDGQKHLKKN HEENLCWNNR DAAVSVMPEV SCSHENTEAV GFCIPVEQNG SVVANGIKVP SLTRINSINR CSYKDNKDQC HYTLPSILTK
201: RRETEGLAQM IHTVDSSMAN GVLSSSVEVG DVNDGVCLHE VSSCKIVESL EMSGCADATD SISSVKDGEA PIVSPNSSQK DVGTLISLKT SPPREHENDR
301: KLEISETEAR KEEKESCENM EVSASPLCEE TPVLALSKNR CIKYTFKRKR KKEVLSNLEG DSSFEESRNM KQKTVEKDDG YLESLKPSFT SESSRDVVYA

Arabidopsis Description

At1g74860 [Source:UniProtKB/TrEMBL;Acc:Q9SSG6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.