CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

nucleus 4
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX73119	Canola	nucleus	79.4	77.29
AT1G74860.1	Thale cress	nucleus	48.88	49.25
CDX96685	Canola	nucleus	37.72	49.19
CDX83796	Canola	plastid	40.45	45.03
CDX83793	Canola	nucleus	25.31	44.74
KRH56999	Soybean	nucleus	32.75	25.24
KRH03382	Soybean	nucleus	32.01	24.71
Solyc06g071250.2.1	Tomato	nucleus	23.82	23.08
VIT_17s0000g07490.t01	Wine grape	nucleus	29.78	22.6
PGSC0003DMT400062849	Potato	nucleus	29.28	19.83
GSMUA_Achr3P12880_001	Banana	nucleus	22.08	15.24
GSMUA_Achr3P28160_001	Banana	nucleus	25.56	15.01
CDX86434	Canola	nucleus	19.35	14.63
GSMUA_Achr9P22660_001	Banana	nucleus	24.32	13.52
Solyc03g113660.2.1	Tomato	nucleus	11.66	13.43
TraesCS6B01G228300.1	Wheat	nucleus	18.86	13.04
TraesCS6A01G198400.1	Wheat	nucleus	18.61	12.86
CDX85195	Canola	nucleus	18.61	12.69
TraesCS6D01G184700.1	Wheat	nucleus	18.86	12.58
Zm00001d016980_P001	Maize	nucleus	18.86	12.14
Os02t0580700-01	Rice	nucleus	17.37	12.03
Zm00001d050907_P001	Maize	nucleus	17.62	11.56
OQU85212	Sorghum	nucleus	18.11	11.21

Protein Annotations

EnsemblPlants:CDY45399	EnsemblPlantsGene:GSBRNA2T00081909001	ncoils:Coil	PANTHER:PTHR34778	PANTHER:PTHR34778:SF1	ProteinID:CDY45399
ProteinID:CDY45399.1	UniParc:UPI0004EF08F9	UniProt:A0A078I7M0	MapMan:35.2	:	:

Description

BnaA07g31790DBnaA07g31790D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I7M0]

Coordinates

chrLK032624:+:43029..45920

Molecular Weight (calculated)

44860.0 Da

IEP (calculated)

9.116

GRAVY (calculated)

-0.741

Length

403 amino acids

Sequence
(BLAST)

001: MIIHFLGTDA SSKRETKKKE PTFFAFLSSW RESSTLVGKQ KKSHNRFSAT ALSALMGDSE TLAALKRAYA DTILNTTKEA AARVLSSEKK TRMYQQEIVT
101: VKDEAITTLL RLKQMYDSKV KETEEMSLKQ QQKVEELEAQ LGEAEDIVGE LRMELRALHD ELNKVTNGNT SYLKGDHQEV SCRKASDAAV SSSQERSGAV
201: PVEQSGSVVA NGITNQSLAR INSIKRCSSK DSMDRCHHTL PSILTKRREV EGCTQMIHAV DKKSMVNGDG EDPMVSQNTS PKEHEQKRKS VIGATDARKE
301: EKEILASSEE TPVLAASKNR CIKYTFKRKR KKEASSNLEG DSSFEESRNV KQKTGEKDDS YLESLKPSFT GESSRDSLCV AQVARQLVPF SKKTSFAAEL
401: VNQ

Best Arabidopsis Sequence Match ( AT1G74860.1 )
(BLAST)

001: MADPETLAAL KRAYADTILN TTKEAAARVM VSEKKARRYQ QELVTVRNEA LHTLVRLKQM LDSKVKETEM QSLKQQQKVE ELEAQLGEAE DIVGELRLEL
101: RVLHDELKKL TDGQKHLKKN HEENLCWNNR DAAVSVMPEV SCSHENTEAV GFCIPVEQNG SVVANGIKVP SLTRINSINR CSYKDNKDQC HYTLPSILTK
201: RRETEGLAQM IHTVDSSMAN GVLSSSVEVG DVNDGVCLHE VSSCKIVESL EMSGCADATD SISSVKDGEA PIVSPNSSQK DVGTLISLKT SPPREHENDR
301: KLEISETEAR KEEKESCENM EVSASPLCEE TPVLALSKNR CIKYTFKRKR KKEVLSNLEG DSSFEESRNM KQKTVEKDDG YLESLKPSFT SESSRDVVYA

Arabidopsis Description

At1g74860 [Source:UniProtKB/TrEMBL;Acc:Q9SSG6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.