Factsheet for Solyc10g009420.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	mitochondrion, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400048586	Potato	mitochondrion	97.15	95.64
VIT_02s0025g01660.t01	Wine grape	cytosol	85.13	85.13
Solyc01g096020.2.1	Tomato	cytosol	88.92	84.38
Solyc03g083270.2.1	Tomato	cytosol	83.54	84.34
Solyc06g051980.2.1	Tomato	cytosol	82.91	83.17
Solyc05g050580.2.1	Tomato	nucleus	85.13	81.27
GSMUA_Achr5P06970_001	Banana	cytosol	81.96	79.94
KRG97189	Soybean	nucleus	79.43	79.94
KRH68916	Soybean	nucleus	77.53	74.7
Solyc01g006190.2.1	Tomato	cytosol	63.61	65.26
Solyc02g069880.2.1	Tomato	cytosol	41.14	64.36
Solyc10g080570.1.1	Tomato	cytosol	57.59	60.07
Solyc06g017910.1.1	Tomato	cytosol	15.82	57.47
VIT_15s0046g00400.t01	Wine grape	cytosol	48.1	56.3
VIT_00s0426g00040.t01	Wine grape	mitochondrion	41.77	54.77
VIT_15s0046g00390.t01	Wine grape	nucleus	44.62	52.42
VIT_15s0046g00410.t01	Wine grape	cytosol	29.11	50.83
VIT_15s0046g00380.t01	Wine grape	cytosol	36.08	45.78
VIT_00s0663g00030.t01	Wine grape	cytosol, extracellular, nucleus	15.19	45.28
VIT_00s0726g00020.t01	Wine grape	extracellular	16.46	45.22
Solyc03g036460.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	17.09	24.43
Solyc03g034460.2.1	Tomato	nucleus	20.57	18.06
Solyc03g034450.2.1	Tomato	nucleus	21.52	17.35
Solyc03g042550.1.1	Tomato	nucleus	19.62	17.22
Solyc03g042520.1.1	Tomato	nucleus	15.51	15.81

Protein Annotations

MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006464	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0046872
GO:GO:0061630	InterPro:IPR001841	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	UniProt:K4CYB8
PFAM:PF03145	PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF42	InterPro:SINA-like
SUPFAM:SSF49599	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc10g009420.2	EnsemblPlants:Solyc10g009420.2.1	InterPro:TRAF-like	UniParc:UPI000276BDAE
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:

Description

E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:K4CYB8]

Coordinates

chr10:+:3487189..3492789

Molecular Weight (calculated)

35835.7 Da

IEP (calculated)

7.579

GRAVY (calculated)

-0.453

Length

316 amino acids

Sequence
(BLAST)

001: MESDSIECIP SLDGIDVNEI VHSQFFSSSK TPHNNNNKNN NSIRPATSVH ELLECPVCTN SMYPPIHQCH NGHTICSTCK ERVHNRCPTC RQELGDIRCL
101: ALEKVAESLE LPCKYGSLGC PEIFPYYSKL KHEAMCNFRP YNCPYAGSEC SIVGDIPYLV AHLRDDHKVD MHSGCTFNHR YVKSNPRQVE NATWMLTVFN
201: CFGQSFCLHF EAFQLGVAPV YMAFLRFMGD ETDARNYSYS LEVGGNGRKL IWEGTPRSIR DSHRKVRDSH DGLIIQRNMA LFFSGGDRKE LKLRVTGKIW
301: KEKRNPDGGA CIPICS

Best Arabidopsis Sequence Match ( AT3G61790.1 )
(BLAST)

001: MDLDSMDCTS TMDVTDDEEI HQDRHSYASV SKHHHTNNNT TNVNAAASGL LPTTTSVHEL LECPVCTNSM YPPIHQCHNG HTLCSTCKAR VHNRCPTCRQ
101: ELGDIRCLAL EKVAESLELP CKHMSLGCPE IFPYYSKLKH ETVCNFRPYS CPYAGSECSV TGDIPFLVAH LRDDHKVDMH SGCTFNHRYV KSNPREVENA
201: TWMLTVFHCF GQYFCLHFEA FQLGMAPVYM AFLRFMGDET EARNYNYSLE VGGYGRKLIW EGTPRSVRDS HRKVRDSHDG LIIQRNMALF FSGGDRKELK
301: LRVTGRIWKE QQQSGEGGGA CIPNLS

Arabidopsis Description

SINAT3E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178V9V8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.