Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 59.72 | 97.29 |
| Solyc03g034460.2.1 | Tomato | nucleus | 94.17 | 94.17 |
| PGSC0003DMT400043047 | Potato | cytosol | 45.56 | 89.13 |
| Solyc03g042520.1.1 | Tomato | nucleus | 70.83 | 82.26 |
| Solyc03g034450.2.1 | Tomato | nucleus | 80.28 | 73.72 |
| HORVU3Hr1G005260.1 | Barley | cytosol | 11.11 | 43.96 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 23.06 | 41.5 |
| KRH42263 | Soybean | nucleus | 32.78 | 36.88 |
| KRH58384 | Soybean | nucleus | 32.5 | 36.56 |
| CDY11709 | Canola | nucleus | 15.56 | 33.94 |
| Bra028395.1-P | Field mustard | nucleus | 28.89 | 32.1 |
| CDY47873 | Canola | nucleus | 28.89 | 32.1 |
| CDY01699 | Canola | nucleus, plastid | 25.0 | 31.91 |
| AT5G37910.1 | Thale cress | nucleus | 24.44 | 31.88 |
| CDY27008 | Canola | nucleus | 28.61 | 31.31 |
| Bra012354.1-P | Field mustard | cytosol | 23.33 | 30.88 |
| CDY12498 | Canola | nucleus | 23.33 | 30.88 |
| Bra004401.1-P | Field mustard | cytosol, mitochondrion, nucleus | 23.06 | 30.86 |
| CDY25763 | Canola | nucleus | 23.06 | 30.51 |
| CDX99687 | Canola | nucleus | 23.89 | 30.39 |
| AT5G37870.1 | Thale cress | nucleus | 23.61 | 30.25 |
| Bra022858.1-P | Field mustard | nucleus | 25.28 | 29.93 |
| CDY52473 | Canola | nucleus | 23.61 | 29.93 |
| Bra018266.1-P | Field mustard | plastid | 23.61 | 29.41 |
| CDY10787 | Canola | plastid | 23.61 | 29.41 |
| Bra000425.1-P | Field mustard | nucleus | 23.06 | 29.33 |
| Bra025434.1-P | Field mustard | nucleus | 23.06 | 29.23 |
| AT5G37900.1 | Thale cress | nucleus | 19.44 | 29.05 |
| TraesCS3D01G028800.1 | Wheat | nucleus | 17.22 | 28.97 |
| AT5G37890.1 | Thale cress | nucleus | 22.78 | 28.67 |
| AT5G37930.1 | Thale cress | nucleus | 27.78 | 28.65 |
| HORVU3Hr1G004860.1 | Barley | cytosol | 20.0 | 28.57 |
| TraesCS3D01G504900.1 | Wheat | nucleus | 21.67 | 28.47 |
| CDY36209 | Canola | plastid | 16.67 | 28.44 |
| HORVU4Hr1G056260.1 | Barley | nucleus | 21.67 | 28.36 |
| TraesCS3A01G062700.1 | Wheat | nucleus | 21.67 | 28.36 |
| TraesCS3B01G053400.1 | Wheat | cytosol, nucleus, plastid | 23.06 | 28.33 |
| KXG32008 | Sorghum | cytosol, nucleus, plastid | 20.83 | 28.2 |
| AT1G66620.1 | Thale cress | nucleus | 24.44 | 28.11 |
| TraesCS3B01G074800.1 | Wheat | cytosol | 21.39 | 27.8 |
| TraesCS3B01G031200.1 | Wheat | nucleus | 22.5 | 27.74 |
| TraesCS3A01G048300.1 | Wheat | nucleus | 21.11 | 27.74 |
| TraesCS3B01G560800.1 | Wheat | nucleus | 21.39 | 27.7 |
| TraesCS3B01G053500.1 | Wheat | cytosol | 21.67 | 27.66 |
| TraesCS3A01G031100.1 | Wheat | cytosol | 20.56 | 27.51 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 22.5 | 27.27 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 26.39 | 27.22 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 22.22 | 27.21 |
| Bra004174.1-P | Field mustard | nucleus | 26.67 | 27.2 |
| TraesCS3A01G030800.1 | Wheat | cytosol | 20.56 | 26.91 |
| TraesCS3D01G031300.1 | Wheat | nucleus | 20.28 | 26.64 |
| KXG32014 | Sorghum | nucleus | 16.11 | 26.36 |
| TraesCS3B01G053000.1 | Wheat | cytosol | 20.56 | 26.33 |
| TraesCS3B01G033800.1 | Wheat | nucleus | 20.0 | 26.28 |
| AT1G66650.1 | Thale cress | nucleus | 23.89 | 26.14 |
| TraesCS3B01G050100.1 | Wheat | cytosol | 19.72 | 25.91 |
| AT1G66630.1 | Thale cress | cytosol | 21.67 | 25.74 |
| TraesCS3D01G029000.1 | Wheat | cytosol | 20.0 | 25.53 |
| TraesCS3A01G031200.1 | Wheat | cytosol | 18.89 | 25.37 |
| CDY01695 | Canola | nucleus | 21.67 | 25.24 |
| TraesCS3B01G052800.1 | Wheat | cytosol | 19.72 | 25.18 |
| TraesCS5A01G531400.2 | Wheat | nucleus | 23.06 | 25.08 |
| Bra004402.1-P | Field mustard | nucleus | 21.94 | 24.92 |
| TraesCS3A01G030600.1 | Wheat | nucleus | 19.44 | 24.82 |
| KXG37942 | Sorghum | cytosol, nucleus, plastid | 18.33 | 24.81 |
| TraesCS3D01G030300.1 | Wheat | nucleus | 20.56 | 24.75 |
| TraesCS3B01G033700.1 | Wheat | nucleus | 20.0 | 24.66 |
| OQU78944 | Sorghum | nucleus | 22.22 | 24.54 |
| AT5G62800.1 | Thale cress | nucleus | 23.61 | 24.43 |
| TraesCS4D01G356400.2 | Wheat | nucleus | 22.78 | 24.4 |
| TraesCS4B01G363200.1 | Wheat | nucleus | 22.22 | 24.39 |
| CDY70665 | Canola | nucleus | 21.94 | 24.38 |
| HORVU3Hr1G004950.1 | Barley | nucleus | 20.28 | 24.33 |
| Bra004176.1-P | Field mustard | nucleus | 22.78 | 24.33 |
| KXG32009 | Sorghum | nucleus | 20.0 | 24.32 |
| TraesCS3B01G032100.1 | Wheat | cytosol | 19.17 | 24.3 |
| Bra019710.1-P | Field mustard | nucleus | 23.06 | 24.27 |
| Zm00001d041049_P001 | Maize | nucleus | 21.94 | 24.16 |
| HORVU3Hr1G005320.1 | Barley | nucleus | 17.78 | 24.15 |
| CDX96138 | Canola | nucleus | 22.5 | 23.82 |
| TraesCS1A01G060800.1 | Wheat | nucleus | 20.28 | 23.78 |
| TraesCS3B01G050700.1 | Wheat | nucleus | 20.28 | 23.78 |
| Solyc02g069880.2.1 | Tomato | cytosol | 13.33 | 23.76 |
| TraesCS3B01G050900.1 | Wheat | cytosol | 19.17 | 23.63 |
| KXG37941 | Sorghum | cytosol | 18.33 | 23.57 |
| CDY36211 | Canola | nucleus | 23.61 | 23.55 |
| TraesCS3B01G050200.1 | Wheat | nucleus | 16.11 | 23.48 |
| AT1G66660.2 | Thale cress | nucleus | 22.22 | 22.99 |
| HORVU4Hr1G087120.3 | Barley | nucleus | 22.78 | 22.91 |
| CDY01757 | Canola | cytosol | 3.33 | 22.64 |
| HORVU2Hr1G118560.2 | Barley | nucleus | 17.5 | 22.5 |
| TraesCS3A01G062800.1 | Wheat | nucleus | 18.06 | 22.41 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 11.11 | 22.35 |
| AT1G66610.1 | Thale cress | nucleus | 22.5 | 22.13 |
| OQU77422 | Sorghum | cytosol | 17.5 | 22.03 |
| Solyc10g080570.1.1 | Tomato | cytosol | 18.33 | 21.78 |
| HORVU3Hr1G004890.1 | Barley | nucleus | 18.06 | 21.67 |
| TraesCS2A01G446400.1 | Wheat | cytosol, nucleus, plastid | 16.11 | 21.56 |
| TraesCS3A01G030100.1 | Wheat | nucleus | 17.78 | 21.55 |
| TraesCS3B01G054400.1 | Wheat | cytosol | 17.78 | 21.55 |
| TraesCS3D01G015600.1 | Wheat | cytosol | 17.78 | 21.55 |
| TraesCS3B01G032300.1 | Wheat | cytosol | 11.94 | 21.5 |
| TraesCS1D01G061700.1 | Wheat | nucleus | 20.83 | 21.31 |
| TraesCS5A01G228300.1 | Wheat | cytosol | 18.61 | 21.27 |
| HORVU3Hr1G004880.2 | Barley | nucleus | 20.0 | 21.24 |
| HORVU1Hr1G012490.3 | Barley | nucleus | 19.44 | 21.08 |
| TraesCSU01G045900.1 | Wheat | cytosol | 17.5 | 21.07 |
| TraesCS3B01G028900.1 | Wheat | cytosol | 17.5 | 20.93 |
| TraesCS3D01G029600.1 | Wheat | nucleus | 19.44 | 20.9 |
| EES17728 | Sorghum | cytosol, mitochondrion, nucleus | 18.89 | 20.8 |
| Solyc01g006190.2.1 | Tomato | cytosol | 17.5 | 20.45 |
| TraesCS3D01G029300.1 | Wheat | nucleus | 19.17 | 20.29 |
| TraesCS3B01G052700.1 | Wheat | nucleus | 14.17 | 20.16 |
| TraesCS3A01G032200.1 | Wheat | nucleus | 18.89 | 20.0 |
| TraesCS3B01G052400.1 | Wheat | nucleus | 18.61 | 19.71 |
| Solyc06g051980.2.1 | Tomato | cytosol | 17.22 | 19.68 |
| Solyc10g009420.2.1 | Tomato | nucleus | 17.22 | 19.62 |
| EES00387 | Sorghum | nucleus | 17.22 | 19.44 |
| TraesCS3A01G031300.1 | Wheat | cytosol | 15.0 | 19.22 |
| OQU86453 | Sorghum | cytosol | 11.39 | 19.16 |
| TraesCS2A01G586400.1 | Wheat | nucleus | 19.17 | 18.9 |
| TraesCS2D01G600200.1 | Wheat | nucleus | 19.17 | 18.9 |
| TraesCSU01G021700.1 | Wheat | nucleus | 19.17 | 18.9 |
| Solyc03g083270.2.1 | Tomato | cytosol | 16.39 | 18.85 |
| TraesCS2A01G589200.1 | Wheat | nucleus, plastid | 19.44 | 18.77 |
| TraesCS2B01G594500.1 | Wheat | nucleus, plastid | 19.44 | 18.67 |
| TraesCS2D01G564800.1 | Wheat | nucleus, plastid | 19.44 | 18.67 |
| OQU77414 | Sorghum | mitochondrion, nucleus | 18.06 | 18.36 |
| OQU77425 | Sorghum | nucleus | 19.17 | 18.35 |
| HORVU2Hr1G118840.1 | Barley | plastid | 18.89 | 18.33 |
| Solyc01g096020.2.1 | Tomato | cytosol | 16.94 | 18.32 |
| HORVU0Hr1G006120.2 | Barley | cytosol, nucleus, plastid | 14.17 | 18.21 |
| EES17731 | Sorghum | nucleus | 17.5 | 18.21 |
| TraesCSU01G231400.1 | Wheat | nucleus | 17.5 | 18.21 |
| Solyc05g050580.2.1 | Tomato | nucleus | 16.67 | 18.13 |
| TraesCS1A01G070000.1 | Wheat | plastid | 12.22 | 18.11 |
| HORVU3Hr1G005270.1 | Barley | nucleus | 16.67 | 17.6 |
| KXG21322 | Sorghum | nucleus | 18.06 | 17.38 |
| TraesCS1D01G102900.1 | Wheat | nucleus | 18.33 | 17.28 |
| HORVU0Hr1G006130.1 | Barley | nucleus | 15.28 | 16.67 |
| TraesCS3D01G029400.1 | Wheat | nucleus | 21.11 | 16.56 |
| TraesCS3A01G032100.1 | Wheat | nucleus | 20.83 | 16.45 |
| TraesCS3B01G052300.1 | Wheat | nucleus | 20.28 | 15.73 |
| TraesCS3D01G029700.1 | Wheat | cytosol, mitochondrion, nucleus | 12.22 | 15.44 |
| EES17735 | Sorghum | mitochondrion | 19.17 | 15.37 |
| CDY01758 | Canola | cytosol | 18.33 | 15.1 |
| TraesCS3B01G031100.1 | Wheat | nucleus | 16.94 | 15.06 |
| EES02574 | Sorghum | nucleus | 18.33 | 14.73 |
| Solyc06g017910.1.1 | Tomato | cytosol | 1.94 | 8.05 |
| Os05t0152700-00 | Rice | cytosol, extracellular | 1.67 | 6.06 |
Protein Annotations
| MapMan:19.2.2.1.5.3.5 | Gene3D:3.30.40.10 | InterPro:7-in-absentia-prot_TRAF-dom | ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006464 | GO:GO:0006511 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 |
| GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0046872 |
| GO:GO:0061630 | InterPro:IPR001841 | InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | UniProt:K4BFX6 |
| PFAM:PF03145 | PFscan:PS50089 | PFscan:PS51081 | PANTHER:PTHR10315 | PANTHER:PTHR10315:SF43 | InterPro:SINA-like |
| SUPFAM:SSF49599 | EnsemblPlantsGene:Solyc03g042550.1 | EnsemblPlants:Solyc03g042550.1.1 | InterPro:TRAF-like | UniParc:UPI0002767F7F | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | SEG:seg | : | : | : |
Description
E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:K4BFX6]
Coordinates
chr3:+:6957706..6960842
Molecular Weight (calculated)
40600.0 Da
IEP (calculated)
5.490
GRAVY (calculated)
-0.378
Length
360 amino acids
Sequence
(BLAST)
(BLAST)
001: MARFSVGRDE HDNDEGGPCN SSTSVCKRRR TTAGTFSRGV VICQQEEVEE RERERVVQEK VEEEAEEEDW GSESEGNFRS SGDRRVPVRE SDVLRENTSI
101: SGESMYQNFE DSIINRSIFM TLLDLDVLDC PICFEHLCVP VFQCGNGHIA CAPCCIKIAN KCPSCCLPIG YNRCRAMENV LESLKVSCVN NRYGCKEILN
201: FSKKTDHENA CIYVPCFCPS HGCDFIGTSA KVYAHFSEKH ASSAEHISFN AVHPIYIEKD QRYIILQMRT EGILFIVNHA SDRVGSSINI ICVGQARQKR
301: RFSYKLVVTD GESSFKLESV AESVPNWSED SPMKKFLVVP KDVVNSSARL KLDVLIEEKE
101: SGESMYQNFE DSIINRSIFM TLLDLDVLDC PICFEHLCVP VFQCGNGHIA CAPCCIKIAN KCPSCCLPIG YNRCRAMENV LESLKVSCVN NRYGCKEILN
201: FSKKTDHENA CIYVPCFCPS HGCDFIGTSA KVYAHFSEKH ASSAEHISFN AVHPIYIEKD QRYIILQMRT EGILFIVNHA SDRVGSSINI ICVGQARQKR
301: RFSYKLVVTD GESSFKLESV AESVPNWSED SPMKKFLVVP KDVVNSSARL KLDVLIEEKE
001: MARFSVCGGD DGEGPSNNNH QSRKRQRLPS IDENEEDAET SDAGSSGEED EDETQNQGMR PESEDRGSTS DDSDREVVIE ERRFGKFVNS QSSSSSKDSP
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS
Arabidopsis Description
E3 ubiquitin-protein ligase SINA-like 10 [Source:UniProtKB/Swiss-Prot;Acc:Q84K34]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.