Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- nucleus 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS1A01G190800.1 | |
| TraesCS1B01G206000.1 | |
| TraesCS1D01G194800.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G37890.1 | TraesCS1A01G190800.1 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | TraesCS1B01G206000.1 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | TraesCS1D01G194800.2 | AT5G65940.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G102900.1 | Wheat | nucleus | 61.32 | 39.01 |
| TraesCS2A01G446400.1 | Wheat | cytosol, nucleus, plastid | 27.16 | 24.54 |
| PGSC0003DMT400043047 | Potato | cytosol | 17.28 | 22.83 |
| TraesCS3A01G062700.1 | Wheat | nucleus | 24.69 | 21.82 |
| TraesCS3A01G030600.1 | Wheat | nucleus | 23.87 | 20.57 |
| TraesCS3A01G030800.1 | Wheat | cytosol | 23.05 | 20.36 |
| TraesCS3A01G031200.1 | Wheat | cytosol | 21.81 | 19.78 |
| TraesCS3A01G030100.1 | Wheat | nucleus | 23.46 | 19.19 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 17.28 | 19.0 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 13.99 | 18.99 |
| TraesCS3A01G031100.1 | Wheat | cytosol | 20.99 | 18.96 |
| TraesCS3A01G048300.1 | Wheat | nucleus | 20.99 | 18.61 |
| TraesCS3A01G062800.1 | Wheat | nucleus | 21.4 | 17.93 |
| CDY01757 | Canola | cytosol | 3.7 | 16.98 |
| TraesCS1A01G060800.1 | Wheat | nucleus | 21.4 | 16.94 |
| TraesCS3A01G101400.1 | Wheat | cytosol | 13.99 | 16.27 |
| TraesCS5A01G228300.1 | Wheat | cytosol | 20.58 | 15.87 |
| TraesCS3A01G031300.1 | Wheat | cytosol | 17.7 | 15.3 |
| TraesCS3A01G032200.1 | Wheat | nucleus | 21.4 | 15.29 |
| TraesCS3A01G101600.1 | Wheat | nucleus | 10.7 | 14.69 |
| TraesCS4A01G369000.1 | Wheat | cytosol | 11.11 | 14.52 |
| TraesCS5A01G531400.2 | Wheat | nucleus | 19.75 | 14.5 |
| AT5G37900.1 | Thale cress | nucleus | 13.99 | 14.11 |
| Bra025434.1-P | Field mustard | nucleus | 16.46 | 14.08 |
| KRH58384 | Soybean | nucleus | 18.52 | 14.06 |
| AT1G66620.1 | Thale cress | nucleus | 17.7 | 13.74 |
| CDY52473 | Canola | nucleus | 16.05 | 13.73 |
| TraesCS4A01G395500.1 | Wheat | cytosol | 15.64 | 13.62 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 16.46 | 13.47 |
| CDX99687 | Canola | nucleus | 15.64 | 13.43 |
| CDY47873 | Canola | nucleus | 17.7 | 13.27 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 16.05 | 13.27 |
| TraesCS3A01G027900.1 | Wheat | cytosol | 14.81 | 13.24 |
| Bra022858.1-P | Field mustard | nucleus | 16.46 | 13.16 |
| Bra018266.1-P | Field mustard | plastid | 15.64 | 13.15 |
| CDY10787 | Canola | plastid | 15.64 | 13.15 |
| KRH42263 | Soybean | nucleus | 17.28 | 13.12 |
| CDY01699 | Canola | nucleus, plastid | 15.23 | 13.12 |
| CDY27008 | Canola | nucleus | 17.7 | 13.07 |
| TraesCS3A01G027500.1 | Wheat | plastid | 14.81 | 13.04 |
| Bra028395.1-P | Field mustard | nucleus | 17.28 | 12.96 |
| TraesCS3A01G025200.1 | Wheat | cytosol, nucleus, plastid | 14.4 | 12.77 |
| Bra000425.1-P | Field mustard | nucleus | 14.81 | 12.72 |
| Bra004401.1-P | Field mustard | cytosol, mitochondrion, nucleus | 13.99 | 12.64 |
| AT1G66630.1 | Thale cress | cytosol | 15.64 | 12.54 |
| CDY12498 | Canola | nucleus | 13.99 | 12.5 |
| Solyc03g034460.2.1 | Tomato | nucleus | 18.52 | 12.5 |
| AT5G37910.1 | Thale cress | nucleus | 13.99 | 12.32 |
| Bra004402.1-P | Field mustard | nucleus | 16.05 | 12.3 |
| TraesCS3A01G032100.1 | Wheat | nucleus | 23.05 | 12.28 |
| AT5G37890.1 | Thale cress | nucleus | 14.4 | 12.24 |
| Solyc03g042550.1.1 | Tomato | nucleus | 18.11 | 12.22 |
| Bra012354.1-P | Field mustard | cytosol | 13.58 | 12.13 |
| CDY25763 | Canola | nucleus | 13.58 | 12.13 |
| TraesCS4A01G148400.2 | Wheat | nucleus | 14.81 | 11.96 |
| CDY36209 | Canola | plastid | 10.29 | 11.85 |
| AT5G37930.1 | Thale cress | nucleus | 16.87 | 11.75 |
| AT5G37870.1 | Thale cress | nucleus | 13.58 | 11.74 |
| TraesCS4A01G395600.1 | Wheat | cytosol | 12.35 | 11.58 |
| TraesCS2A01G589200.1 | Wheat | nucleus, plastid | 17.7 | 11.53 |
| AT1G66650.1 | Thale cress | nucleus | 15.23 | 11.25 |
| AT1G66610.1 | Thale cress | nucleus | 16.87 | 11.2 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 16.05 | 11.17 |
| Bra004174.1-P | Field mustard | nucleus | 16.05 | 11.05 |
| CDY01695 | Canola | nucleus | 13.99 | 11.0 |
| Solyc03g034450.2.1 | Tomato | nucleus | 17.7 | 10.97 |
| CDY11709 | Canola | nucleus | 7.41 | 10.91 |
| TraesCS3A01G158000.1 | Wheat | cytosol, nucleus, plasma membrane | 13.99 | 10.9 |
| PGSC0003DMT400043050 | Potato | nucleus | 16.87 | 10.76 |
| TraesCS2A01G586400.1 | Wheat | nucleus | 16.05 | 10.68 |
| TraesCS2A01G129000.1 | Wheat | plasma membrane | 13.99 | 10.66 |
| Solyc03g042520.1.1 | Tomato | nucleus | 13.58 | 10.65 |
| CDY70665 | Canola | nucleus | 13.99 | 10.49 |
| AT1G66660.2 | Thale cress | nucleus | 14.81 | 10.34 |
| Bra019710.1-P | Field mustard | nucleus | 14.4 | 10.23 |
| AT5G62800.1 | Thale cress | nucleus | 13.58 | 9.48 |
| TraesCS7A01G332700.1 | Wheat | cytosol, nucleus, peroxisome | 13.17 | 9.38 |
| TraesCS6A01G086800.1 | Wheat | nucleus | 11.93 | 9.32 |
| Bra004176.1-P | Field mustard | nucleus | 12.76 | 9.2 |
| CDX96138 | Canola | nucleus | 12.76 | 9.12 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 7.41 | 9.0 |
| TraesCS1A01G136400.2 | Wheat | cytoskeleton, nucleus, peroxisome | 12.76 | 8.93 |
| CDY36211 | Canola | nucleus | 12.76 | 8.59 |
| TraesCS1A01G371400.1 | Wheat | cytosol | 6.17 | 7.5 |
| CDY01758 | Canola | cytosol | 5.35 | 2.97 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | InterPro:7-in-absentia-prot_TRAF-dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006511 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 |
| InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | PFAM:PF03145 | PFscan:PS51081 | PANTHER:PTHR10315 |
| PANTHER:PTHR10315:SF35 | InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like | EnsemblPlantsGene:TraesCS1A01G070000 | EnsemblPlants:TraesCS1A01G070000.1 |
| InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr1A:+:52540952..52541789
Molecular Weight (calculated)
25827.8 Da
IEP (calculated)
6.585
GRAVY (calculated)
0.119
Length
243 amino acids
Sequence
(BLAST)
(BLAST)
001: MPVPSTAASA ASLWSRQSSS ALWGWRCARR AAAQATAGAA PENILGTVRV SCPHAAHGCG AMLAYYDLHQ HRMTCANAPC ARCPLGTCCF VGPMAELLDH
101: FITLHELPLT AEDRAGKSFG IDLLDGFNVV STTVRDGADQ HLLLLNVVRQ PFGRGIAAVC VRPPPAATAS SSSSSAAAAS KTVVLELRYS VNRHYQESAF
201: DVPFADLADG FLEDDESAQF IVPKSVHPDD QATMLLMAFI SIK
101: FITLHELPLT AEDRAGKSFG IDLLDGFNVV STTVRDGADQ HLLLLNVVRQ PFGRGIAAVC VRPPPAATAS SSSSSAAAAS KTVVLELRYS VNRHYQESAF
201: DVPFADLADG FLEDDESAQF IVPKSVHPDD QATMLLMAFI SIK
001: MARFSVCGGD DGEGPSNNNH QSRKRQRLPS IDENEEDAET SDAGSSGEED EDETQNQGMR PESEDRGSTS DDSDREVVIE ERRFGKFVNS QSSSSSKDSP
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS
Arabidopsis Description
E3 ubiquitin-protein ligase SINA-like 10 [Source:UniProtKB/Swiss-Prot;Acc:Q84K34]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.