Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 62.19 | 98.32 |
| Bra025434.1-P | Field mustard | nucleus | 53.36 | 53.17 |
| Bra004401.1-P | Field mustard | cytosol, mitochondrion, nucleus | 40.64 | 42.75 |
| HORVU3Hr1G005260.1 | Barley | cytosol | 13.43 | 41.76 |
| Bra022858.1-P | Field mustard | nucleus | 44.52 | 41.45 |
| Bra018266.1-P | Field mustard | plastid | 40.99 | 40.14 |
| Bra004402.1-P | Field mustard | nucleus | 41.7 | 37.22 |
| Bra012354.1-P | Field mustard | cytosol | 35.34 | 36.76 |
| Bra028395.1-P | Field mustard | nucleus | 38.87 | 33.95 |
| Bra004174.1-P | Field mustard | nucleus | 41.34 | 33.14 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 20.85 | 29.5 |
| TraesCS3D01G028800.1 | Wheat | nucleus | 22.26 | 29.44 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 22.97 | 29.41 |
| Bra019710.1-P | Field mustard | nucleus | 34.28 | 28.36 |
| HORVU3Hr1G004860.1 | Barley | cytosol | 23.67 | 26.59 |
| KRH42263 | Soybean | nucleus | 30.04 | 26.56 |
| TraesCS3D01G031300.1 | Wheat | nucleus | 25.44 | 26.28 |
| TraesCS3D01G504900.1 | Wheat | nucleus | 25.44 | 26.28 |
| KRH58384 | Soybean | nucleus | 29.68 | 26.25 |
| KXG32008 | Sorghum | cytosol, nucleus, plastid | 24.38 | 25.94 |
| TraesCS3A01G048300.1 | Wheat | nucleus | 25.09 | 25.91 |
| TraesCS3B01G033800.1 | Wheat | nucleus | 25.09 | 25.91 |
| TraesCS3A01G030800.1 | Wheat | cytosol | 24.73 | 25.45 |
| KXG37942 | Sorghum | cytosol, nucleus, plastid | 23.67 | 25.19 |
| TraesCS3B01G050100.1 | Wheat | cytosol | 24.38 | 25.18 |
| TraesCS3B01G052800.1 | Wheat | cytosol | 25.09 | 25.18 |
| TraesCS3B01G053500.1 | Wheat | cytosol | 25.09 | 25.18 |
| TraesCS3D01G029000.1 | Wheat | cytosol | 25.09 | 25.18 |
| HORVU4Hr1G056260.1 | Barley | nucleus | 24.38 | 25.09 |
| TraesCS3A01G031100.1 | Wheat | cytosol | 23.67 | 24.91 |
| TraesCS3B01G560800.1 | Wheat | nucleus | 24.38 | 24.82 |
| TraesCS3A01G031200.1 | Wheat | cytosol | 23.32 | 24.63 |
| TraesCS3B01G053000.1 | Wheat | cytosol | 24.38 | 24.56 |
| KXG32009 | Sorghum | nucleus | 25.44 | 24.32 |
| TraesCS3A01G030600.1 | Wheat | nucleus | 24.03 | 24.11 |
| Bra004176.1-P | Field mustard | nucleus | 28.62 | 24.04 |
| HORVU3Hr1G004950.1 | Barley | nucleus | 25.44 | 24.0 |
| TraesCS3A01G062700.1 | Wheat | nucleus | 23.32 | 24.0 |
| TraesCS3B01G032100.1 | Wheat | cytosol | 24.03 | 23.94 |
| PGSC0003DMT400043047 | Potato | cytosol | 15.55 | 23.91 |
| TraesCS3B01G074800.1 | Wheat | cytosol | 23.32 | 23.83 |
| HORVU3Hr1G004890.1 | Barley | nucleus | 24.73 | 23.33 |
| TraesCS1A01G060800.1 | Wheat | nucleus | 25.09 | 23.13 |
| Solyc03g034460.2.1 | Tomato | nucleus | 29.33 | 23.06 |
| Solyc03g042550.1.1 | Tomato | nucleus | 29.33 | 23.06 |
| TraesCS3B01G050700.1 | Wheat | nucleus | 24.73 | 22.8 |
| TraesCS3B01G053400.1 | Wheat | cytosol, nucleus, plastid | 23.32 | 22.53 |
| KXG37941 | Sorghum | cytosol | 22.26 | 22.5 |
| TraesCS3D01G030300.1 | Wheat | nucleus | 23.67 | 22.41 |
| PGSC0003DMT400043050 | Potato | nucleus | 30.04 | 22.31 |
| EES00387 | Sorghum | nucleus | 24.73 | 21.94 |
| TraesCS2A01G446400.1 | Wheat | cytosol, nucleus, plastid | 20.85 | 21.93 |
| TraesCS3B01G031200.1 | Wheat | nucleus | 22.61 | 21.92 |
| TraesCS3B01G052700.1 | Wheat | nucleus | 19.43 | 21.74 |
| Solyc03g042520.1.1 | Tomato | nucleus | 23.67 | 21.61 |
| TraesCS3B01G054400.1 | Wheat | cytosol | 22.61 | 21.55 |
| HORVU3Hr1G005320.1 | Barley | nucleus | 20.14 | 21.51 |
| TraesCS4D01G356400.2 | Wheat | nucleus | 25.44 | 21.43 |
| Zm00001d041049_P001 | Maize | nucleus | 24.73 | 21.41 |
| KXG32014 | Sorghum | nucleus | 16.61 | 21.36 |
| TraesCS3A01G031300.1 | Wheat | cytosol | 21.2 | 21.35 |
| TraesCS4B01G363200.1 | Wheat | nucleus | 24.73 | 21.34 |
| TraesCS5A01G228300.1 | Wheat | cytosol | 23.67 | 21.27 |
| Solyc03g034450.2.1 | Tomato | nucleus | 29.33 | 21.17 |
| TraesCS5A01G531400.2 | Wheat | nucleus | 24.73 | 21.15 |
| TraesCS3B01G033700.1 | Wheat | nucleus | 21.55 | 20.89 |
| TraesCS3A01G030100.1 | Wheat | nucleus | 21.91 | 20.88 |
| TraesCS3D01G015600.1 | Wheat | cytosol | 21.91 | 20.88 |
| OQU78944 | Sorghum | nucleus | 24.03 | 20.86 |
| HORVU1Hr1G012490.3 | Barley | nucleus | 24.38 | 20.78 |
| TraesCSU01G045900.1 | Wheat | cytosol | 21.91 | 20.74 |
| TraesCS3B01G050200.1 | Wheat | nucleus | 18.02 | 20.65 |
| TraesCS3B01G028900.1 | Wheat | cytosol | 21.91 | 20.6 |
| TraesCS3B01G052400.1 | Wheat | nucleus | 24.73 | 20.59 |
| TraesCS3D01G029300.1 | Wheat | nucleus | 24.73 | 20.59 |
| HORVU2Hr1G118560.2 | Barley | nucleus | 20.14 | 20.36 |
| HORVU3Hr1G004880.2 | Barley | nucleus | 24.38 | 20.35 |
| TraesCS3D01G029600.1 | Wheat | nucleus | 24.03 | 20.3 |
| OQU77422 | Sorghum | cytosol | 20.49 | 20.28 |
| TraesCS3B01G050900.1 | Wheat | cytosol | 20.85 | 20.21 |
| TraesCS3A01G032200.1 | Wheat | nucleus | 24.03 | 20.0 |
| TraesCS1D01G061700.1 | Wheat | nucleus | 24.73 | 19.89 |
| EES17728 | Sorghum | cytosol, mitochondrion, nucleus | 22.97 | 19.88 |
| TraesCS3A01G062800.1 | Wheat | nucleus | 20.14 | 19.66 |
| TraesCS3B01G032300.1 | Wheat | cytosol | 13.78 | 19.5 |
| Bra014589.1-P | Field mustard | nucleus | 19.79 | 19.18 |
| Bra016898.1-P | Field mustard | cytosol | 20.49 | 19.02 |
| HORVU4Hr1G087120.3 | Barley | nucleus | 24.03 | 18.99 |
| HORVU0Hr1G006120.2 | Barley | cytosol, nucleus, plastid | 18.37 | 18.57 |
| Bra003315.1-P | Field mustard | cytosol, nucleus, plastid | 16.96 | 18.46 |
| Bra010392.1-P | Field mustard | nucleus | 20.85 | 18.44 |
| Bra026301.1-P | Field mustard | nucleus | 20.85 | 18.32 |
| Bra014421.1-P | Field mustard | cytosol | 20.49 | 18.12 |
| Bra003473.1-P | Field mustard | nucleus | 20.14 | 17.92 |
| Bra000249.1-P | Field mustard | nucleus | 19.43 | 17.92 |
| EES17731 | Sorghum | nucleus | 21.55 | 17.63 |
| TraesCS2A01G589200.1 | Wheat | nucleus, plastid | 22.97 | 17.43 |
| TraesCS2B01G594500.1 | Wheat | nucleus, plastid | 22.97 | 17.33 |
| TraesCS2D01G564800.1 | Wheat | nucleus, plastid | 22.97 | 17.33 |
| HORVU2Hr1G118840.1 | Barley | plastid | 22.61 | 17.25 |
| OQU77414 | Sorghum | mitochondrion, nucleus | 21.2 | 16.95 |
| OQU86453 | Sorghum | cytosol | 12.37 | 16.36 |
| Bra007376.1-P | Field mustard | cytosol | 15.9 | 16.3 |
| TraesCSU01G231400.1 | Wheat | nucleus | 19.79 | 16.18 |
| TraesCSU01G021700.1 | Wheat | nucleus | 20.85 | 16.16 |
| KXG21322 | Sorghum | nucleus | 21.2 | 16.04 |
| OQU77425 | Sorghum | nucleus | 21.2 | 15.96 |
| TraesCS2A01G586400.1 | Wheat | nucleus | 20.49 | 15.89 |
| TraesCS2D01G600200.1 | Wheat | nucleus | 20.49 | 15.89 |
| HORVU3Hr1G005270.1 | Barley | nucleus | 19.08 | 15.84 |
| HORVU0Hr1G006130.1 | Barley | nucleus | 18.37 | 15.76 |
| TraesCS1D01G102900.1 | Wheat | nucleus | 21.2 | 15.71 |
| TraesCS3A01G032100.1 | Wheat | nucleus | 24.38 | 15.13 |
| TraesCS1A01G070000.1 | Wheat | plastid | 12.72 | 14.81 |
| TraesCS3D01G029400.1 | Wheat | nucleus | 24.03 | 14.81 |
| TraesCS3B01G052300.1 | Wheat | nucleus | 24.03 | 14.66 |
| TraesCS3D01G029700.1 | Wheat | cytosol, mitochondrion, nucleus | 14.49 | 14.39 |
| EES17735 | Sorghum | mitochondrion | 21.91 | 13.81 |
| EES02574 | Sorghum | nucleus | 21.2 | 13.39 |
| TraesCS3B01G031100.1 | Wheat | nucleus | 19.08 | 13.33 |
| Bra001519.1-P | Field mustard | nucleus | 9.19 | 12.15 |
| Bra008328.1-P | Field mustard | cytosol | 3.53 | 9.26 |
| Os05t0152700-00 | Rice | cytosol, extracellular | 1.06 | 3.03 |
Protein Annotations
| MapMan:19.2.2.1.5.3.5 | Gene3D:3.30.40.10 | InterPro:7-in-absentia-prot_TRAF-dom | EnsemblPlantsGene:Bra000425 | EnsemblPlants:Bra000425.1 | EnsemblPlants:Bra000425.1-P |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006464 | GO:GO:0006511 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0019538 | GO:GO:0046872 |
| InterPro:IPR001841 | InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | UniProt:M4C897 | PFAM:PF03145 |
| PFscan:PS50089 | PFscan:PS51081 | PANTHER:PTHR10315 | PANTHER:PTHR10315:SF43 | InterPro:SINA-like | SUPFAM:SSF49599 |
| InterPro:TRAF-like | UniParc:UPI000253FEB8 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | : |
Description
AT5G37890 (E=7e-085) | seven in absentia (SINA) protein, putative
Coordinates
chrA03:+:11050696..11051712
Molecular Weight (calculated)
31945.9 Da
IEP (calculated)
7.238
GRAVY (calculated)
-0.084
Length
283 amino acids
Sequence
(BLAST)
(BLAST)
001: MECNSSDSNV SRQKRKRTED DKTRSAMLDF GVLDCPICIE PLSIPIFQCD NGHLACSSCC PKLKNKCPSC ALPVGHSRCR AMETLLKSVF LPCQNAKYGC
101: TESVAFGKEP THEKDCTFAE YCCCPVQYCN YAGSYIDLYL HYVSSNHMTV SEQIRDELCI GISCGIKMNI SDKILIQRAT FVQRATVERL LFAVQCFKEP
201: FGVYVTVSCI APSIQEVGPF SYRLIYTVDG QTIIYKLSEM KKIREVSLQT PQDNYMLIPH SLLCGESLEM RLCIKMLNIE HHS
101: TESVAFGKEP THEKDCTFAE YCCCPVQYCN YAGSYIDLYL HYVSSNHMTV SEQIRDELCI GISCGIKMNI SDKILIQRAT FVQRATVERL LFAVQCFKEP
201: FGVYVTVSCI APSIQEVGPF SYRLIYTVDG QTIIYKLSEM KKIREVSLQT PQDNYMLIPH SLLCGESLEM RLCIKMLNIE HHS
001: MVGAAILESP GEGIGSNSIL SQKRQLSSSD AAKRDAKKRS TMLMDLEILD CPICYEAFTI PIFQCDNGHL ACSSCCPKLN NKCPACTSPV GHNRCRAMES
101: VLESILIPCP NAKLGCKKNV SYGKELTHEK ECMFSHCACP ALDCNYTSSY KDLYTHYRIT HMEINQINTF ICDIPLSVRM NISKKILIRT EHLTNHLFAV
201: QCFREPYGVY VTVSCIAPSS PELSQYSYAL SYTVDGHTVI YQSPEVKRVL KLSFQTPQEN FMLIPNSLLR GDVLEMRISV KKLNKE
101: VLESILIPCP NAKLGCKKNV SYGKELTHEK ECMFSHCACP ALDCNYTSSY KDLYTHYRIT HMEINQINTF ICDIPLSVRM NISKKILIRT EHLTNHLFAV
201: QCFREPYGVY VTVSCIAPSS PELSQYSYAL SYTVDGHTVI YQSPEVKRVL KLSFQTPQEN FMLIPNSLLR GDVLEMRISV KKLNKE
Arabidopsis Description
E3 ubiquitin-protein ligase SINA-like 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.