Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY70665 | Canola | nucleus | 92.98 | 98.15 |
| AT1G66650.1 | Thale cress | nucleus | 57.6 | 59.88 |
| Bra012354.1-P | Field mustard | cytosol | 33.92 | 42.65 |
| Bra004176.1-P | Field mustard | nucleus | 39.18 | 39.76 |
| HORVU3Hr1G005260.1 | Barley | cytosol | 10.53 | 39.56 |
| Bra028395.1-P | Field mustard | nucleus | 37.43 | 39.51 |
| Bra025434.1-P | Field mustard | nucleus | 30.7 | 36.97 |
| Bra018266.1-P | Field mustard | plastid | 29.24 | 34.6 |
| Bra000425.1-P | Field mustard | nucleus | 28.36 | 34.28 |
| Bra004401.1-P | Field mustard | cytosol, mitochondrion, nucleus | 26.02 | 33.09 |
| Bra022858.1-P | Field mustard | nucleus | 28.95 | 32.57 |
| Bra004402.1-P | Field mustard | nucleus | 28.95 | 31.23 |
| Bra004174.1-P | Field mustard | nucleus | 31.87 | 30.88 |
| KRH58384 | Soybean | nucleus | 28.07 | 30.0 |
| KRH42263 | Soybean | nucleus | 27.78 | 29.69 |
| TraesCS3D01G028800.1 | Wheat | nucleus | 17.84 | 28.5 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 16.08 | 27.5 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 17.25 | 26.7 |
| HORVU3Hr1G004860.1 | Barley | cytosol | 19.59 | 26.59 |
| TraesCS3A01G048300.1 | Wheat | nucleus | 20.47 | 25.55 |
| TraesCS3D01G031300.1 | Wheat | nucleus | 20.47 | 25.55 |
| TraesCS3B01G033800.1 | Wheat | nucleus | 20.18 | 25.18 |
| TraesCS3D01G504900.1 | Wheat | nucleus | 19.88 | 24.82 |
| KXG32008 | Sorghum | cytosol, nucleus, plastid | 19.3 | 24.81 |
| TraesCS3B01G050100.1 | Wheat | cytosol | 19.59 | 24.45 |
| TraesCS3A01G031100.1 | Wheat | cytosol | 19.01 | 24.16 |
| TraesCS3A01G030800.1 | Wheat | cytosol | 19.3 | 24.0 |
| TraesCS3B01G053500.1 | Wheat | cytosol | 19.59 | 23.76 |
| KXG32009 | Sorghum | nucleus | 20.47 | 23.65 |
| TraesCS3A01G062700.1 | Wheat | nucleus | 19.01 | 23.64 |
| TraesCS3B01G053000.1 | Wheat | cytosol | 19.3 | 23.49 |
| TraesCS3A01G030600.1 | Wheat | nucleus | 19.3 | 23.4 |
| TraesCS3B01G560800.1 | Wheat | nucleus | 19.01 | 23.38 |
| TraesCS3B01G074800.1 | Wheat | cytosol | 18.71 | 23.1 |
| Solyc03g034460.2.1 | Tomato | nucleus | 24.27 | 23.06 |
| Solyc03g042550.1.1 | Tomato | nucleus | 24.27 | 23.06 |
| HORVU4Hr1G056260.1 | Barley | nucleus | 18.42 | 22.91 |
| TraesCS3B01G052800.1 | Wheat | cytosol | 18.42 | 22.34 |
| TraesCS3D01G029000.1 | Wheat | cytosol | 18.42 | 22.34 |
| HORVU3Hr1G004890.1 | Barley | nucleus | 19.59 | 22.33 |
| PGSC0003DMT400043050 | Potato | nucleus | 24.85 | 22.31 |
| TraesCS2A01G446400.1 | Wheat | cytosol, nucleus, plastid | 17.54 | 22.3 |
| PGSC0003DMT400043047 | Potato | cytosol | 11.99 | 22.28 |
| KXG32014 | Sorghum | nucleus | 14.33 | 22.27 |
| TraesCS3A01G030100.1 | Wheat | nucleus | 19.3 | 22.22 |
| TraesCS5A01G228300.1 | Wheat | cytosol | 20.47 | 22.22 |
| Solyc03g034450.2.1 | Tomato | nucleus | 25.44 | 22.19 |
| TraesCS3A01G031200.1 | Wheat | cytosol | 17.25 | 22.01 |
| TraesCS3B01G054400.1 | Wheat | cytosol | 19.01 | 21.89 |
| TraesCS3B01G053400.1 | Wheat | cytosol, nucleus, plastid | 18.71 | 21.84 |
| TraesCS3D01G030300.1 | Wheat | nucleus | 19.01 | 21.74 |
| TraesCS3B01G028900.1 | Wheat | cytosol | 19.01 | 21.59 |
| TraesCS3B01G031200.1 | Wheat | nucleus | 18.42 | 21.58 |
| TraesCS3B01G033700.1 | Wheat | nucleus | 18.42 | 21.58 |
| TraesCS3B01G050900.1 | Wheat | cytosol | 18.42 | 21.58 |
| TraesCS3D01G015600.1 | Wheat | cytosol | 18.71 | 21.55 |
| HORVU3Hr1G005320.1 | Barley | nucleus | 16.67 | 21.51 |
| KXG37942 | Sorghum | cytosol, nucleus, plastid | 16.67 | 21.43 |
| TraesCSU01G045900.1 | Wheat | cytosol | 18.71 | 21.4 |
| TraesCS3A01G031300.1 | Wheat | cytosol | 17.54 | 21.35 |
| TraesCS3D01G029600.1 | Wheat | nucleus | 20.76 | 21.19 |
| TraesCS3B01G050700.1 | Wheat | nucleus | 19.01 | 21.17 |
| TraesCS3B01G032100.1 | Wheat | cytosol | 17.54 | 21.13 |
| Solyc03g042520.1.1 | Tomato | nucleus | 19.01 | 20.97 |
| TraesCS1A01G060800.1 | Wheat | nucleus | 18.71 | 20.85 |
| TraesCS5A01G531400.2 | Wheat | nucleus | 20.18 | 20.85 |
| TraesCS4D01G356400.2 | Wheat | nucleus | 20.47 | 20.83 |
| TraesCS3A01G062800.1 | Wheat | nucleus | 17.54 | 20.69 |
| TraesCS3B01G052700.1 | Wheat | nucleus | 15.2 | 20.55 |
| Zm00001d041049_P001 | Maize | nucleus | 19.59 | 20.49 |
| HORVU3Hr1G004880.2 | Barley | nucleus | 20.18 | 20.35 |
| HORVU3Hr1G004950.1 | Barley | nucleus | 17.84 | 20.33 |
| OQU77422 | Sorghum | cytosol | 16.96 | 20.28 |
| TraesCS3B01G050200.1 | Wheat | nucleus | 14.62 | 20.24 |
| OQU78944 | Sorghum | nucleus | 19.01 | 19.94 |
| TraesCS4B01G363200.1 | Wheat | nucleus | 19.01 | 19.82 |
| HORVU4Hr1G087120.3 | Barley | nucleus | 20.47 | 19.55 |
| EES00387 | Sorghum | nucleus | 18.13 | 19.44 |
| KXG37941 | Sorghum | cytosol | 15.79 | 19.29 |
| EES17728 | Sorghum | cytosol, mitochondrion, nucleus | 18.42 | 19.27 |
| OQU86453 | Sorghum | cytosol | 11.99 | 19.16 |
| Bra010392.1-P | Field mustard | nucleus | 17.25 | 18.44 |
| HORVU1Hr1G012490.3 | Barley | nucleus | 17.84 | 18.37 |
| HORVU0Hr1G006120.2 | Barley | cytosol, nucleus, plastid | 14.91 | 18.21 |
| HORVU2Hr1G118560.2 | Barley | nucleus | 14.91 | 18.21 |
| Bra016898.1-P | Field mustard | cytosol | 16.08 | 18.03 |
| Bra026301.1-P | Field mustard | nucleus | 16.96 | 18.01 |
| Bra000249.1-P | Field mustard | nucleus | 16.08 | 17.92 |
| TraesCS1D01G061700.1 | Wheat | nucleus | 18.42 | 17.9 |
| TraesCS2B01G594500.1 | Wheat | nucleus, plastid | 19.3 | 17.6 |
| TraesCS2D01G564800.1 | Wheat | nucleus, plastid | 19.3 | 17.6 |
| TraesCS2A01G589200.1 | Wheat | nucleus, plastid | 19.01 | 17.43 |
| TraesCS3A01G032200.1 | Wheat | nucleus | 17.25 | 17.35 |
| TraesCS3B01G052400.1 | Wheat | nucleus | 17.25 | 17.35 |
| TraesCS3D01G029300.1 | Wheat | nucleus | 17.25 | 17.35 |
| HORVU2Hr1G118840.1 | Barley | plastid | 18.71 | 17.25 |
| Bra014421.1-P | Field mustard | cytosol | 16.08 | 17.19 |
| EES17731 | Sorghum | nucleus | 17.25 | 17.05 |
| TraesCS3B01G032300.1 | Wheat | cytosol | 9.94 | 17.0 |
| OQU77414 | Sorghum | mitochondrion, nucleus | 17.54 | 16.95 |
| TraesCSU01G231400.1 | Wheat | nucleus | 16.96 | 16.76 |
| HORVU3Hr1G005270.1 | Barley | nucleus | 16.67 | 16.72 |
| Bra003473.1-P | Field mustard | nucleus | 15.5 | 16.67 |
| Bra014589.1-P | Field mustard | nucleus | 13.74 | 16.1 |
| TraesCS2A01G586400.1 | Wheat | nucleus | 16.96 | 15.89 |
| TraesCSU01G021700.1 | Wheat | nucleus | 16.96 | 15.89 |
| HORVU0Hr1G006130.1 | Barley | nucleus | 15.2 | 15.76 |
| TraesCS2D01G600200.1 | Wheat | nucleus | 16.67 | 15.62 |
| KXG21322 | Sorghum | nucleus | 16.96 | 15.51 |
| OQU77425 | Sorghum | nucleus | 16.96 | 15.43 |
| EES17735 | Sorghum | mitochondrion | 20.18 | 15.37 |
| TraesCS3B01G031100.1 | Wheat | nucleus | 18.13 | 15.31 |
| Bra003315.1-P | Field mustard | cytosol, nucleus, plastid | 11.4 | 15.0 |
| TraesCS1D01G102900.1 | Wheat | nucleus | 16.67 | 14.92 |
| TraesCS1A01G070000.1 | Wheat | plastid | 10.23 | 14.4 |
| TraesCS3A01G032100.1 | Wheat | nucleus | 18.42 | 13.82 |
| TraesCS3D01G029700.1 | Wheat | cytosol, mitochondrion, nucleus | 11.4 | 13.68 |
| EES02574 | Sorghum | nucleus | 17.84 | 13.62 |
| TraesCS3D01G029400.1 | Wheat | nucleus | 18.13 | 13.51 |
| TraesCS3B01G052300.1 | Wheat | nucleus | 17.84 | 13.15 |
| Bra007376.1-P | Field mustard | cytosol | 9.94 | 12.32 |
| Bra001519.1-P | Field mustard | nucleus | 6.43 | 10.28 |
| Bra008328.1-P | Field mustard | cytosol | 3.22 | 10.19 |
| Os05t0152700-00 | Rice | cytosol, extracellular | 0.88 | 3.03 |
Protein Annotations
| MapMan:19.2.2.1.5.3.5 | Gene3D:3.30.40.10 | InterPro:7-in-absentia-prot_TRAF-dom | EnsemblPlantsGene:Bra019710 | EnsemblPlants:Bra019710.1 | EnsemblPlants:Bra019710.1-P |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006464 | GO:GO:0006511 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0019538 | GO:GO:0046872 |
| InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | UniProt:M4DT67 | PFAM:PF03145 | PFscan:PS51081 |
| PANTHER:PTHR10315 | PANTHER:PTHR10315:SF43 | InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like | UniParc:UPI000253EDEF |
| InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | SEG:seg | : | : | : |
Description
AT1G66650 (E=7e-087) | seven in absentia (SINA) protein, putative
Coordinates
chrA06:+:4845206..4846314
Molecular Weight (calculated)
38357.9 Da
IEP (calculated)
8.126
GRAVY (calculated)
-0.538
Length
342 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTSPRRDDG RRASDRGSSK KQRLPHVSGN ESSDDSSSAE EDDVGSQNGS TESCERVLLV LSDDSDSDEE IRLTDILRSR RPQRLSPPKS MTLPNSDVLD
101: CPCCFEPLKR PVFQCNNGHL ACYSCCTKLK KKCSLCAMPI GDTRCRPIEK VIKTCLVACS NAKYGCKQST RYDKVANHEK LCVFAPCSCP VRNCNYVGSY
201: KNLNNHFRAT HKRIPGEIMS FVFNSPKLFG LDHNDDQVIF QEEKEGDLVV VKGFKRSDGV YVTVRRIAPI VKEIPKLSCS IARLKAHSTL RLGFQVENVQ
301: KVGEQQVQPE DNFMLIPSHM SGCCHCMKMQ ICIGNEDDYT RI
101: CPCCFEPLKR PVFQCNNGHL ACYSCCTKLK KKCSLCAMPI GDTRCRPIEK VIKTCLVACS NAKYGCKQST RYDKVANHEK LCVFAPCSCP VRNCNYVGSY
201: KNLNNHFRAT HKRIPGEIMS FVFNSPKLFG LDHNDDQVIF QEEKEGDLVV VKGFKRSDGV YVTVRRIAPI VKEIPKLSCS IARLKAHSTL RLGFQVENVQ
301: KVGEQQVQPE DNFMLIPSHM SGCCHCMKMQ ICIGNEDDYT RI
001: MTKLGRRNDG GGKSHRSSTK RQRRTSVSVD DPSPGEEEEK TLVVLTDDSD SEEDDKPLGD VLRTCRKRRV SSPKSVTLPN SNVLECPNCF DPLKKPIFQC
101: NNGHLACFLC CIKLKKRCSF CKLPIGDVRC RAMEKVIKAG LVSCSNAIYG CKQSTTYGNQ LQSHEKVCVF APCSCPIKDC NYIGFYKDLI NHFRATHKVS
201: PGDINSFVFD RPVIFGLDLD SSDKMVIFVE EKQGNLFVVQ GFIGSHGVYA TVSHIAPMVP EVRKFSCSLA RLRPYSTLRL GLEVKNIQKL RSQEEQPQED
301: FLLIPSYMVN GDHMKMEISI GDKNDYTHI
101: NNGHLACFLC CIKLKKRCSF CKLPIGDVRC RAMEKVIKAG LVSCSNAIYG CKQSTTYGNQ LQSHEKVCVF APCSCPIKDC NYIGFYKDLI NHFRATHKVS
201: PGDINSFVFD RPVIFGLDLD SSDKMVIFVE EKQGNLFVVQ GFIGSHGVYA TVSHIAPMVP EVRKFSCSLA RLRPYSTLRL GLEVKNIQKL RSQEEQPQED
301: FLLIPSYMVN GDHMKMEISI GDKNDYTHI
Arabidopsis Description
E3 ubiquitin-protein ligase SINA-like 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9M0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.