Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS1A01G190800.1 | |
| TraesCS1B01G206000.1 | |
| TraesCS1D01G194800.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G37890.1 | TraesCS1A01G190800.1 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | TraesCS1B01G206000.1 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | TraesCS1D01G194800.2 | AT5G65940.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G560800.1 | Wheat | nucleus | 87.59 | 86.33 |
| HORVU4Hr1G056260.1 | Barley | nucleus | 85.4 | 85.09 |
| KXG32008 | Sorghum | cytosol, nucleus, plastid | 56.57 | 58.27 |
| TraesCS3D01G028800.1 | Wheat | nucleus | 32.85 | 42.06 |
| TraesCS3D01G031300.1 | Wheat | nucleus | 37.96 | 37.96 |
| TraesCS3D01G029000.1 | Wheat | cytosol | 37.59 | 36.52 |
| TraesCS3D01G030300.1 | Wheat | nucleus | 38.32 | 35.12 |
| TraesCS3D01G015600.1 | Wheat | cytosol | 32.85 | 30.3 |
| TraesCS3D01G029600.1 | Wheat | nucleus | 36.86 | 30.15 |
| CDY11709 | Canola | nucleus | 17.88 | 29.7 |
| TraesCS1D01G061700.1 | Wheat | nucleus | 36.86 | 28.69 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 22.63 | 28.05 |
| CDY01699 | Canola | nucleus, plastid | 28.1 | 27.3 |
| CDY12498 | Canola | nucleus | 27.01 | 27.21 |
| Bra012354.1-P | Field mustard | cytosol | 26.64 | 26.84 |
| CDY25763 | Canola | nucleus | 26.64 | 26.84 |
| AT5G37870.1 | Thale cress | nucleus | 27.37 | 26.69 |
| CDX99687 | Canola | nucleus | 27.37 | 26.5 |
| Bra025434.1-P | Field mustard | nucleus | 27.37 | 26.41 |
| CDY52473 | Canola | nucleus | 27.37 | 26.41 |
| Bra004401.1-P | Field mustard | cytosol, mitochondrion, nucleus | 25.91 | 26.39 |
| TraesCS3D01G029300.1 | Wheat | nucleus | 32.48 | 26.18 |
| CDY36209 | Canola | plastid | 20.07 | 26.07 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 28.1 | 25.93 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 27.74 | 25.85 |
| KRH42263 | Soybean | nucleus | 29.93 | 25.62 |
| Bra000425.1-P | Field mustard | nucleus | 26.28 | 25.44 |
| AT5G37910.1 | Thale cress | nucleus | 25.55 | 25.36 |
| KRH58384 | Soybean | nucleus | 29.56 | 25.31 |
| PGSC0003DMT400043047 | Potato | cytosol | 16.79 | 25.0 |
| AT5G37890.1 | Thale cress | nucleus | 25.91 | 24.83 |
| AT1G66630.1 | Thale cress | cytosol | 27.37 | 24.75 |
| Bra022858.1-P | Field mustard | nucleus | 27.01 | 24.34 |
| AT1G66620.1 | Thale cress | nucleus | 27.74 | 24.28 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 17.52 | 24.0 |
| Bra004402.1-P | Field mustard | nucleus | 27.74 | 23.97 |
| AT5G37900.1 | Thale cress | nucleus | 20.8 | 23.65 |
| TraesCS3D01G029700.1 | Wheat | cytosol, mitochondrion, nucleus | 24.45 | 23.51 |
| TraesCS3D01G020800.1 | Wheat | cytosol, nucleus, plastid | 23.36 | 23.19 |
| Bra018266.1-P | Field mustard | plastid | 24.45 | 23.18 |
| CDY10787 | Canola | plastid | 24.45 | 23.18 |
| CDY47873 | Canola | nucleus | 27.01 | 22.84 |
| Bra028395.1-P | Field mustard | nucleus | 27.01 | 22.84 |
| TraesCS3D01G018100.1 | Wheat | cytosol | 22.26 | 22.76 |
| TraesCS3D01G029400.1 | Wheat | nucleus | 37.23 | 22.22 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 28.1 | 22.06 |
| TraesCS4D01G356400.2 | Wheat | nucleus | 27.01 | 22.02 |
| CDY01695 | Canola | nucleus | 24.82 | 22.01 |
| CDY27008 | Canola | nucleus | 26.28 | 21.88 |
| Bra004174.1-P | Field mustard | nucleus | 28.1 | 21.81 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 14.23 | 21.79 |
| Solyc03g034460.2.1 | Tomato | nucleus | 28.47 | 21.67 |
| Solyc03g042550.1.1 | Tomato | nucleus | 28.47 | 21.67 |
| AT5G37930.1 | Thale cress | nucleus | 27.37 | 21.49 |
| TraesCS1D01G102900.1 | Wheat | nucleus | 29.93 | 21.47 |
| TraesCS3D01G018300.1 | Wheat | mitochondrion | 25.18 | 21.36 |
| AT5G62800.1 | Thale cress | nucleus | 27.01 | 21.26 |
| AT1G66650.1 | Thale cress | nucleus | 25.18 | 20.97 |
| CDY70665 | Canola | nucleus | 24.09 | 20.37 |
| TraesCS1D01G134000.1 | Wheat | mitochondrion, nucleus, peroxisome, plasma membrane | 18.61 | 20.24 |
| PGSC0003DMT400043050 | Potato | nucleus | 28.1 | 20.21 |
| TraesCS2D01G600200.1 | Wheat | nucleus | 26.64 | 20.0 |
| TraesCS2D01G131700.1 | Wheat | cytosol | 21.9 | 19.93 |
| Bra019710.1-P | Field mustard | nucleus | 24.82 | 19.88 |
| AT1G66610.1 | Thale cress | nucleus | 25.91 | 19.4 |
| Solyc03g042520.1.1 | Tomato | nucleus | 21.9 | 19.35 |
| TraesCS4D01G164700.1 | Wheat | nucleus | 21.17 | 19.27 |
| Solyc03g034450.2.1 | Tomato | nucleus | 27.37 | 19.13 |
| TraesCS5D01G504400.1 | Wheat | cytosol | 13.87 | 18.91 |
| TraesCS7D01G340900.1 | Wheat | cytosol, nucleus, peroxisome | 22.99 | 18.48 |
| TraesCS3D01G165600.1 | Wheat | cytoskeleton, nucleus, plasma membrane | 21.9 | 18.46 |
| TraesCS2D01G564800.1 | Wheat | nucleus, plastid | 24.82 | 18.13 |
| AT1G66660.2 | Thale cress | nucleus | 22.99 | 18.1 |
| Bra004176.1-P | Field mustard | nucleus | 21.9 | 17.8 |
| CDX96138 | Canola | nucleus | 21.9 | 17.65 |
| CDY36211 | Canola | nucleus | 22.63 | 17.17 |
| CDY01757 | Canola | cytosol | 2.19 | 11.32 |
| CDY01758 | Canola | cytosol | 17.15 | 10.76 |
Protein Annotations
| MapMan:19.2.2.1.5.3.5 | Gene3D:3.30.40.10 | InterPro:7-in-absentia-prot_TRAF-dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006511 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 |
| InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | PFAM:PF03145 | PFscan:PS51081 | PANTHER:PTHR10315 |
| PANTHER:PTHR10315:SF43 | InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like | EnsemblPlantsGene:TraesCS3D01G504900 | EnsemblPlants:TraesCS3D01G504900.1 |
| InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | : | : | : | : |
Description
No Description!
Coordinates
chr3D:+:592523632..592525074
Molecular Weight (calculated)
30217.5 Da
IEP (calculated)
7.260
GRAVY (calculated)
-0.184
Length
274 amino acids
Sequence
(BLAST)
(BLAST)
001: MGAQQQQETN GKEAEEGGVG KRRKVDTDVT MDLDILDCPV CFLPLRPPIF QCTVGHAICS SCRDKLRDKC YLCSLPTAYN RCRMVEKVVE SIKLACSNSS
101: HGCTARITYY QKEEHEKGCQ HAPCFCPETG CSFSGPTKVL LEHFLGEHDW CYGEKDLRYG KTYRIKTLLG VLGPTVLMGN DGRLFLVNMT MESLGGVISV
201: CCVEPHISGS RFKCRLALSC GEPSYSQTTE FLTSSTNLHD GFPKDCFLFL VPKVLLGDTG TNPAATVCVT LKPQ
101: HGCTARITYY QKEEHEKGCQ HAPCFCPETG CSFSGPTKVL LEHFLGEHDW CYGEKDLRYG KTYRIKTLLG VLGPTVLMGN DGRLFLVNMT MESLGGVISV
201: CCVEPHISGS RFKCRLALSC GEPSYSQTTE FLTSSTNLHD GFPKDCFLFL VPKVLLGDTG TNPAATVCVT LKPQ
001: MVGVLLSERN GSQKRHCSSI SSDDGRKRVD KTRSAMLTDL DILDCPICYQ ALKIPVFQCG NGHLACSSCC PKLRNKCPAC ALPVGHIRCR AMERVLESVL
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M
Arabidopsis Description
Putative E3 ubiquitin-protein ligase SINA-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.