Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G37910.1 | Thale cress | nucleus | 70.12 | 61.23 |
| AT5G37890.1 | Thale cress | nucleus | 54.36 | 45.8 |
| AT5G37870.1 | Thale cress | nucleus | 52.7 | 45.2 |
| AT1G66620.1 | Thale cress | nucleus | 42.32 | 32.59 |
| AT1G66630.1 | Thale cress | cytosol | 39.0 | 31.02 |
| AT5G62800.1 | Thale cress | nucleus | 41.08 | 28.45 |
| HORVU3Hr1G005260.1 | Barley | cytosol | 10.37 | 27.47 |
| PGSC0003DMT400043047 | Potato | cytosol | 20.75 | 27.17 |
| AT1G66610.1 | Thale cress | nucleus | 40.66 | 26.78 |
| AT5G37930.1 | Thale cress | nucleus | 34.85 | 24.07 |
| AT1G66650.1 | Thale cress | nucleus | 32.78 | 24.01 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 21.16 | 23.08 |
| HORVU4Hr1G056260.1 | Barley | nucleus | 25.31 | 22.18 |
| TraesCS3A01G031200.1 | Wheat | cytosol | 23.65 | 21.27 |
| TraesCS3A01G062700.1 | Wheat | nucleus | 24.07 | 21.09 |
| TraesCS3D01G028800.1 | Wheat | nucleus | 18.67 | 21.03 |
| TraesCS3A01G031100.1 | Wheat | cytosol | 23.24 | 20.82 |
| TraesCS3D01G504900.1 | Wheat | nucleus | 23.65 | 20.8 |
| KRH42263 | Soybean | nucleus | 27.39 | 20.62 |
| TraesCS3B01G074800.1 | Wheat | cytosol | 23.65 | 20.58 |
| TraesCS3B01G053500.1 | Wheat | cytosol | 24.07 | 20.57 |
| KRH58384 | Soybean | nucleus | 26.97 | 20.31 |
| TraesCS3A01G030800.1 | Wheat | cytosol | 22.82 | 20.0 |
| HORVU3Hr1G004860.1 | Barley | cytosol | 20.75 | 19.84 |
| TraesCS3B01G560800.1 | Wheat | nucleus | 22.82 | 19.78 |
| TraesCS3D01G031300.1 | Wheat | nucleus | 22.41 | 19.71 |
| TraesCS3B01G031200.1 | Wheat | nucleus | 23.65 | 19.52 |
| Solyc03g034460.2.1 | Tomato | nucleus | 29.05 | 19.44 |
| Solyc03g042550.1.1 | Tomato | nucleus | 29.05 | 19.44 |
| AT1G66660.2 | Thale cress | nucleus | 27.8 | 19.25 |
| HORVU3Hr1G005320.1 | Barley | nucleus | 21.16 | 19.25 |
| TraesCS3B01G053000.1 | Wheat | cytosol | 22.41 | 19.22 |
| KXG32008 | Sorghum | cytosol, nucleus, plastid | 21.16 | 19.17 |
| TraesCS3B01G032300.1 | Wheat | cytosol | 15.77 | 19.0 |
| TraesCS3A01G048300.1 | Wheat | nucleus | 21.58 | 18.98 |
| TraesCS3B01G033800.1 | Wheat | nucleus | 21.58 | 18.98 |
| TraesCS3B01G050100.1 | Wheat | cytosol | 21.58 | 18.98 |
| TraesCS3D01G029000.1 | Wheat | cytosol | 21.99 | 18.79 |
| TraesCS3B01G053400.1 | Wheat | cytosol, nucleus, plastid | 22.82 | 18.77 |
| TraesCS2A01G446400.1 | Wheat | cytosol, nucleus, plastid | 20.75 | 18.59 |
| TraesCS3A01G030600.1 | Wheat | nucleus | 21.58 | 18.44 |
| TraesCS3B01G052800.1 | Wheat | cytosol | 21.58 | 18.44 |
| TraesCS3B01G032100.1 | Wheat | cytosol | 21.58 | 18.31 |
| TraesCS1A01G060800.1 | Wheat | nucleus | 23.24 | 18.24 |
| PGSC0003DMT400043050 | Potato | nucleus | 28.63 | 18.11 |
| KXG37942 | Sorghum | cytosol, nucleus, plastid | 19.92 | 18.05 |
| HORVU3Hr1G004950.1 | Barley | nucleus | 22.41 | 18.0 |
| KXG32009 | Sorghum | nucleus | 21.99 | 17.91 |
| Solyc03g042520.1.1 | Tomato | nucleus | 22.82 | 17.74 |
| TraesCS3A01G062800.1 | Wheat | nucleus | 21.16 | 17.59 |
| TraesCS4D01G356400.2 | Wheat | nucleus | 24.48 | 17.56 |
| TraesCS3B01G054400.1 | Wheat | cytosol | 21.58 | 17.51 |
| TraesCS3D01G015600.1 | Wheat | cytosol | 21.58 | 17.51 |
| TraesCS3B01G052700.1 | Wheat | nucleus | 18.26 | 17.39 |
| TraesCS3D01G030300.1 | Wheat | nucleus | 21.58 | 17.39 |
| TraesCSU01G045900.1 | Wheat | cytosol | 21.58 | 17.39 |
| TraesCS3B01G028900.1 | Wheat | cytosol | 21.58 | 17.28 |
| TraesCS3A01G030100.1 | Wheat | nucleus | 21.16 | 17.17 |
| HORVU2Hr1G118560.2 | Barley | nucleus | 19.92 | 17.14 |
| TraesCS3B01G033700.1 | Wheat | nucleus | 20.75 | 17.12 |
| TraesCS4B01G363200.1 | Wheat | nucleus | 23.24 | 17.07 |
| TraesCS3B01G050200.1 | Wheat | nucleus | 17.43 | 17.0 |
| Solyc03g034450.2.1 | Tomato | nucleus | 27.39 | 16.84 |
| KXG37941 | Sorghum | cytosol | 19.5 | 16.79 |
| TraesCS3B01G050900.1 | Wheat | cytosol | 20.33 | 16.78 |
| TraesCS5A01G531400.2 | Wheat | nucleus | 22.41 | 16.31 |
| OQU78944 | Sorghum | nucleus | 21.99 | 16.26 |
| HORVU3Hr1G004890.1 | Barley | nucleus | 19.92 | 16.0 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 13.28 | 16.0 |
| Zm00001d041049_P001 | Maize | nucleus | 21.58 | 15.9 |
| TraesCS5A01G228300.1 | Wheat | cytosol | 20.75 | 15.87 |
| HORVU0Hr1G006120.2 | Barley | cytosol, nucleus, plastid | 18.26 | 15.71 |
| HORVU1Hr1G012490.3 | Barley | nucleus | 21.58 | 15.66 |
| TraesCS3A01G031300.1 | Wheat | cytosol | 18.26 | 15.66 |
| TraesCS1D01G061700.1 | Wheat | nucleus | 22.82 | 15.62 |
| KXG32014 | Sorghum | nucleus | 14.11 | 15.45 |
| AT2G41980.1 | Thale cress | nucleus | 19.5 | 15.41 |
| TraesCS3B01G050700.1 | Wheat | nucleus | 19.5 | 15.31 |
| HORVU4Hr1G087120.3 | Barley | nucleus | 22.41 | 15.08 |
| OQU77422 | Sorghum | cytosol | 17.84 | 15.04 |
| AT5G53360.1 | Thale cress | plasma membrane | 14.52 | 15.02 |
| EES17728 | Sorghum | cytosol, mitochondrion, nucleus | 20.33 | 14.98 |
| OQU86453 | Sorghum | cytosol | 13.28 | 14.95 |
| EES00387 | Sorghum | nucleus | 19.5 | 14.73 |
| TraesCS2A01G589200.1 | Wheat | nucleus, plastid | 22.41 | 14.48 |
| TraesCS2B01G594500.1 | Wheat | nucleus, plastid | 22.41 | 14.4 |
| TraesCS2D01G564800.1 | Wheat | nucleus, plastid | 22.41 | 14.4 |
| TraesCS3D01G029600.1 | Wheat | nucleus | 19.92 | 14.33 |
| HORVU2Hr1G118840.1 | Barley | plastid | 21.99 | 14.29 |
| TraesCS3A01G032200.1 | Wheat | nucleus | 19.92 | 14.12 |
| TraesCS3B01G052400.1 | Wheat | nucleus | 19.92 | 14.12 |
| TraesCS3D01G029300.1 | Wheat | nucleus | 19.92 | 14.12 |
| TraesCS1A01G070000.1 | Wheat | plastid | 14.11 | 13.99 |
| TraesCSU01G021700.1 | Wheat | nucleus | 21.16 | 13.97 |
| AT3G58040.3 | Thale cress | cytosol | 17.84 | 13.96 |
| HORVU0Hr1G006130.1 | Barley | nucleus | 19.09 | 13.94 |
| KXG21322 | Sorghum | nucleus | 21.58 | 13.9 |
| HORVU3Hr1G004880.2 | Barley | nucleus | 19.5 | 13.86 |
| OQU77414 | Sorghum | mitochondrion, nucleus | 20.33 | 13.84 |
| TraesCS2A01G586400.1 | Wheat | nucleus | 20.75 | 13.7 |
| TraesCS2D01G600200.1 | Wheat | nucleus | 20.75 | 13.7 |
| AT4G27880.1 | Thale cress | nucleus | 18.26 | 13.46 |
| TraesCS3D01G029700.1 | Wheat | cytosol, mitochondrion, nucleus | 15.77 | 13.33 |
| EES17731 | Sorghum | nucleus | 19.09 | 13.29 |
| AT3G61790.1 | Thale cress | nucleus | 17.84 | 13.19 |
| HORVU3Hr1G005270.1 | Barley | nucleus | 18.26 | 12.9 |
| OQU77425 | Sorghum | nucleus | 19.92 | 12.77 |
| TraesCS1D01G102900.1 | Wheat | nucleus | 19.09 | 12.04 |
| TraesCS3A01G032100.1 | Wheat | nucleus | 21.99 | 11.62 |
| TraesCS3D01G029400.1 | Wheat | nucleus | 21.58 | 11.33 |
| TraesCSU01G231400.1 | Wheat | nucleus | 16.18 | 11.27 |
| TraesCS3B01G031100.1 | Wheat | nucleus | 18.67 | 11.11 |
| TraesCS3B01G052300.1 | Wheat | nucleus | 21.16 | 10.99 |
| AT3G13672.2 | Thale cress | nucleus | 10.79 | 10.7 |
| EES02574 | Sorghum | nucleus | 19.5 | 10.49 |
| EES17735 | Sorghum | mitochondrion | 18.26 | 9.8 |
| Os05t0152700-00 | Rice | cytosol, extracellular | 1.24 | 3.03 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:7-in-absentia-prot_TRAF-dom | ArrayExpress:AT5G37900 | EnsemblPlantsGene:AT5G37900 | RefSeq:AT5G37900 |
| TAIR:AT5G37900 | RefSeq:AT5G37900-TAIR-G | EnsemblPlants:AT5G37900.1 | TAIR:AT5G37900.1 | Unigene:At.55200 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006464 | GO:GO:0006511 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 |
| GO:GO:0046872 | GO:GO:0061630 | InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | PFAM:PF03145 |
| PFscan:PS51081 | PANTHER:PTHR10315 | PANTHER:PTHR10315:SF43 | InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like |
| UniParc:UPI00000A567B | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | SEG:seg | : | : |
Description
TRAF-like superfamily protein [Source:TAIR;Acc:AT5G37900]
Coordinates
chr5:-:15093903..15094802
Molecular Weight (calculated)
27486.1 Da
IEP (calculated)
5.137
GRAVY (calculated)
-0.127
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MVGALEALIS QGHGGERVAK RQRSATLLDL DILDCPICCE GLTCPIFQPM ENILESILVT CPNDMFGCTE SFLYGKKSTH EEECIFSLCS CPSLDCEYSG
101: RYEDLYDHYK LTHISNSYWT TNCFRSSIPY KAPMLISDKI QITRVYEKKI LFAVQCFRES CGVYVTVSCI APSAPEVGQF SYQISYTVDE HTMVYRSPQM
201: KRVRKVSFET PQENFMLIPH NLLRSELLDI KLSIVETSNQ E
101: RYEDLYDHYK LTHISNSYWT TNCFRSSIPY KAPMLISDKI QITRVYEKKI LFAVQCFRES CGVYVTVSCI APSAPEVGQF SYQISYTVDE HTMVYRSPQM
201: KRVRKVSFET PQENFMLIPH NLLRSELLDI KLSIVETSNQ E
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.