Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400043047 | Potato | cytosol | 44.36 | 91.85 |
| Solyc03g034450.2.1 | Tomato | nucleus | 93.44 | 90.82 |
| HORVU3Hr1G005260.1 | Barley | cytosol | 11.29 | 47.25 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 23.88 | 45.5 |
| KRH42263 | Soybean | nucleus | 31.5 | 37.5 |
| KRH58384 | Soybean | nucleus | 31.5 | 37.5 |
| CDY11709 | Canola | nucleus | 15.75 | 36.36 |
| Bra028395.1-P | Field mustard | nucleus | 29.66 | 34.88 |
| CDY47873 | Canola | nucleus | 29.66 | 34.88 |
| CDY27008 | Canola | nucleus | 29.66 | 34.35 |
| Bra004401.1-P | Field mustard | cytosol, mitochondrion, nucleus | 23.88 | 33.83 |
| CDY01699 | Canola | nucleus, plastid | 24.93 | 33.69 |
| AT5G37930.1 | Thale cress | nucleus | 29.66 | 32.38 |
| CDY12498 | Canola | nucleus | 23.1 | 32.35 |
| CDY25763 | Canola | nucleus | 23.1 | 32.35 |
| Bra012354.1-P | Field mustard | cytosol | 22.83 | 31.99 |
| AT5G37910.1 | Thale cress | nucleus | 22.83 | 31.52 |
| Bra018266.1-P | Field mustard | plastid | 23.88 | 31.49 |
| CDY10787 | Canola | plastid | 23.88 | 31.49 |
| CDX99687 | Canola | nucleus | 23.1 | 31.1 |
| CDY52473 | Canola | nucleus | 23.1 | 30.99 |
| CDY36209 | Canola | plastid | 17.06 | 30.81 |
| AT1G66620.1 | Thale cress | nucleus | 25.2 | 30.67 |
| Bra022858.1-P | Field mustard | nucleus | 24.41 | 30.59 |
| Bra025434.1-P | Field mustard | nucleus | 22.57 | 30.28 |
| AT5G37870.1 | Thale cress | nucleus | 22.31 | 30.25 |
| Bra000425.1-P | Field mustard | nucleus | 22.31 | 30.04 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 23.1 | 29.93 |
| TraesCS3D01G028800.1 | Wheat | nucleus | 16.8 | 29.91 |
| HORVU3Hr1G004860.1 | Barley | cytosol | 19.68 | 29.76 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 22.57 | 28.96 |
| AT5G37890.1 | Thale cress | nucleus | 21.52 | 28.67 |
| AT5G37900.1 | Thale cress | nucleus | 18.11 | 28.63 |
| KXG32008 | Sorghum | cytosol, nucleus, plastid | 19.95 | 28.57 |
| AT1G66630.1 | Thale cress | cytosol | 22.57 | 28.38 |
| OQU78944 | Sorghum | nucleus | 24.15 | 28.22 |
| TraesCS3D01G504900.1 | Wheat | nucleus | 20.21 | 28.1 |
| HORVU4Hr1G056260.1 | Barley | nucleus | 20.21 | 28.0 |
| TraesCS3A01G030800.1 | Wheat | cytosol | 20.21 | 28.0 |
| TraesCS3B01G053400.1 | Wheat | cytosol, nucleus, plastid | 21.52 | 27.99 |
| AT1G66650.1 | Thale cress | nucleus | 24.15 | 27.96 |
| Zm00001d041049_P001 | Maize | nucleus | 23.88 | 27.83 |
| TraesCS3B01G074800.1 | Wheat | cytosol | 20.21 | 27.8 |
| TraesCS3A01G031100.1 | Wheat | cytosol | 19.42 | 27.51 |
| TraesCS3B01G031200.1 | Wheat | nucleus | 21.0 | 27.4 |
| AT1G66660.2 | Thale cress | nucleus | 24.93 | 27.3 |
| TraesCS3A01G062700.1 | Wheat | nucleus | 19.68 | 27.27 |
| TraesCS5A01G531400.2 | Wheat | nucleus | 23.62 | 27.19 |
| Bra004402.1-P | Field mustard | nucleus | 22.57 | 27.13 |
| Bra004176.1-P | Field mustard | nucleus | 23.88 | 27.0 |
| Bra004174.1-P | Field mustard | nucleus | 24.93 | 26.91 |
| KXG32014 | Sorghum | nucleus | 15.49 | 26.82 |
| TraesCS3B01G053000.1 | Wheat | cytosol | 19.68 | 26.69 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 24.41 | 26.65 |
| TraesCS3B01G033800.1 | Wheat | nucleus | 19.16 | 26.64 |
| TraesCS3D01G031300.1 | Wheat | nucleus | 19.16 | 26.64 |
| TraesCS3B01G560800.1 | Wheat | nucleus | 19.42 | 26.62 |
| CDY01695 | Canola | nucleus | 21.52 | 26.54 |
| TraesCS4D01G356400.2 | Wheat | nucleus | 23.36 | 26.49 |
| CDX96138 | Canola | nucleus | 23.62 | 26.47 |
| CDY01757 | Canola | cytosol | 3.67 | 26.42 |
| TraesCS3A01G048300.1 | Wheat | nucleus | 18.9 | 26.28 |
| TraesCS3B01G053500.1 | Wheat | cytosol | 19.42 | 26.24 |
| TraesCS3D01G029000.1 | Wheat | cytosol | 19.42 | 26.24 |
| TraesCS4B01G363200.1 | Wheat | nucleus | 22.57 | 26.22 |
| TraesCS3B01G052800.1 | Wheat | cytosol | 19.16 | 25.89 |
| CDY36211 | Canola | nucleus | 24.41 | 25.76 |
| TraesCS3B01G050100.1 | Wheat | cytosol | 18.37 | 25.55 |
| TraesCS1A01G060800.1 | Wheat | nucleus | 20.47 | 25.41 |
| KXG32009 | Sorghum | nucleus | 19.68 | 25.34 |
| HORVU3Hr1G004950.1 | Barley | nucleus | 19.95 | 25.33 |
| KXG37942 | Sorghum | cytosol, nucleus, plastid | 17.59 | 25.19 |
| TraesCS3D01G030300.1 | Wheat | nucleus | 19.68 | 25.08 |
| TraesCS3A01G031200.1 | Wheat | cytosol | 17.59 | 25.0 |
| Bra019710.1-P | Field mustard | nucleus | 22.31 | 24.85 |
| TraesCS3A01G030600.1 | Wheat | nucleus | 18.37 | 24.82 |
| CDY70665 | Canola | nucleus | 21.0 | 24.69 |
| TraesCS3B01G033700.1 | Wheat | nucleus | 18.9 | 24.66 |
| TraesCS3B01G032100.1 | Wheat | cytosol | 18.37 | 24.65 |
| HORVU4Hr1G087120.3 | Barley | nucleus | 23.1 | 24.58 |
| HORVU3Hr1G005320.1 | Barley | nucleus | 17.06 | 24.53 |
| HORVU2Hr1G118560.2 | Barley | nucleus | 17.85 | 24.29 |
| TraesCS3D01G015600.1 | Wheat | cytosol | 18.9 | 24.24 |
| AT5G62800.1 | Thale cress | nucleus | 22.05 | 24.14 |
| AT1G66610.1 | Thale cress | nucleus | 23.1 | 24.04 |
| TraesCS3B01G050900.1 | Wheat | cytosol | 18.37 | 23.97 |
| PGSC0003DMT400054414 | Potato | cytosol | 19.16 | 23.93 |
| TraesCS3A01G030100.1 | Wheat | nucleus | 18.64 | 23.91 |
| KXG37941 | Sorghum | cytosol | 17.32 | 23.57 |
| TraesCS3B01G054400.1 | Wheat | cytosol | 18.37 | 23.57 |
| TraesCS3B01G050200.1 | Wheat | nucleus | 15.22 | 23.48 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 11.02 | 23.46 |
| HORVU3Hr1G004890.1 | Barley | nucleus | 18.37 | 23.33 |
| TraesCS3B01G052700.1 | Wheat | nucleus | 15.49 | 23.32 |
| TraesCS3B01G028900.1 | Wheat | cytosol | 18.11 | 22.92 |
| PGSC0003DMT400060943 | Potato | cytosol | 14.7 | 22.86 |
| PGSC0003DMT400060947 | Potato | cytosol | 14.7 | 22.86 |
| TraesCS3B01G050700.1 | Wheat | nucleus | 18.37 | 22.8 |
| TraesCS3A01G062800.1 | Wheat | nucleus | 17.32 | 22.76 |
| TraesCSU01G045900.1 | Wheat | cytosol | 17.85 | 22.74 |
| TraesCS1D01G061700.1 | Wheat | nucleus | 21.0 | 22.73 |
| HORVU3Hr1G004880.2 | Barley | nucleus | 20.21 | 22.71 |
| EES17728 | Sorghum | cytosol, mitochondrion, nucleus | 19.42 | 22.63 |
| TraesCS2A01G446400.1 | Wheat | cytosol, nucleus, plastid | 15.75 | 22.3 |
| HORVU1Hr1G012490.3 | Barley | nucleus | 19.42 | 22.29 |
| OQU77422 | Sorghum | cytosol | 16.54 | 22.03 |
| PGSC0003DMT400050427 | Potato | cytosol | 18.11 | 21.9 |
| TraesCS3D01G029600.1 | Wheat | nucleus | 19.16 | 21.79 |
| PGSC0003DMT400081996 | Potato | cytosol | 17.59 | 21.75 |
| PGSC0003DMT400010948 | Potato | cytosol | 17.59 | 21.61 |
| TraesCS3B01G032300.1 | Wheat | cytosol | 11.29 | 21.5 |
| TraesCS3D01G029300.1 | Wheat | nucleus | 19.16 | 21.47 |
| TraesCS5A01G228300.1 | Wheat | cytosol | 17.59 | 21.27 |
| TraesCS3A01G032200.1 | Wheat | nucleus | 18.9 | 21.18 |
| TraesCS2A01G586400.1 | Wheat | nucleus | 20.21 | 21.1 |
| TraesCS2D01G600200.1 | Wheat | nucleus | 20.21 | 21.1 |
| TraesCSU01G021700.1 | Wheat | nucleus | 20.21 | 21.1 |
| PGSC0003DMT400023575 | Potato | cytosol | 17.32 | 21.02 |
| PGSC0003DMT400048586 | Potato | mitochondrion | 17.59 | 20.87 |
| TraesCS3B01G052400.1 | Wheat | nucleus | 18.37 | 20.59 |
| TraesCS2A01G589200.1 | Wheat | nucleus, plastid | 19.95 | 20.38 |
| TraesCS2D01G564800.1 | Wheat | nucleus, plastid | 19.95 | 20.27 |
| PGSC0003DMT400018049 | Potato | nucleus | 17.59 | 20.12 |
| OQU77414 | Sorghum | mitochondrion, nucleus | 18.64 | 20.06 |
| HORVU0Hr1G006120.2 | Barley | cytosol, nucleus, plastid | 14.7 | 20.0 |
| TraesCS2B01G594500.1 | Wheat | nucleus, plastid | 19.68 | 20.0 |
| TraesCS3A01G031300.1 | Wheat | cytosol | 14.7 | 19.93 |
| EES00387 | Sorghum | nucleus | 16.54 | 19.75 |
| OQU77425 | Sorghum | nucleus | 19.42 | 19.68 |
| HORVU2Hr1G118840.1 | Barley | plastid | 19.16 | 19.68 |
| PGSC0003DMT400000649 | Potato | cytosol | 17.32 | 19.64 |
| OQU86453 | Sorghum | cytosol | 11.02 | 19.63 |
| EES17731 | Sorghum | nucleus | 17.59 | 19.36 |
| HORVU3Hr1G005270.1 | Barley | nucleus | 17.06 | 19.06 |
| KXG21322 | Sorghum | nucleus | 18.37 | 18.72 |
| TraesCSU01G231400.1 | Wheat | nucleus | 16.8 | 18.5 |
| HORVU0Hr1G006130.1 | Barley | nucleus | 15.75 | 18.18 |
| TraesCS1D01G102900.1 | Wheat | nucleus | 18.11 | 18.06 |
| TraesCS3D01G029400.1 | Wheat | nucleus | 21.52 | 17.86 |
| TraesCS3A01G032100.1 | Wheat | nucleus | 21.26 | 17.76 |
| TraesCS3B01G052300.1 | Wheat | nucleus | 20.73 | 17.03 |
| TraesCS1A01G070000.1 | Wheat | plastid | 10.76 | 16.87 |
| CDY01758 | Canola | cytosol | 18.9 | 16.48 |
| EES17735 | Sorghum | mitochondrion | 19.16 | 16.26 |
| TraesCS3D01G029700.1 | Wheat | cytosol, mitochondrion, nucleus | 11.55 | 15.44 |
| EES02574 | Sorghum | nucleus | 17.85 | 15.18 |
| TraesCS3B01G031100.1 | Wheat | nucleus | 15.49 | 14.57 |
| Os05t0152700-00 | Rice | cytosol, extracellular | 1.84 | 7.07 |
Protein Annotations
| MapMan:19.2.2.1.5.3.5 | Gene3D:3.30.40.10 | InterPro:7-in-absentia-prot_TRAF-dom | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 |
| GO:GO:0006511 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0016567 | GO:GO:0019538 | GO:GO:0046872 | InterPro:IPR001841 | InterPro:IPR008974 |
| InterPro:IPR013010 | InterPro:IPR013083 | UniProt:M1BDZ5 | PFAM:PF03145 | EnsemblPlantsGene:PGSC0003DMG401016693 | PGSC:PGSC0003DMG401016693 |
| EnsemblPlants:PGSC0003DMT400043050 | PFscan:PS50089 | PFscan:PS51081 | PANTHER:PTHR10315 | PANTHER:PTHR10315:SF43 | InterPro:SINA-like |
| SUPFAM:SSF49599 | SUPFAM:SSF57850 | InterPro:TRAF-like | UniParc:UPI0002952A7A | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD |
| InterPro:Znf_SIAH | SEG:seg | : | : | : | : |
Description
Ubiquitin-protein ligase [Source:PGSC_GENE;Acc:PGSC0003DMG401016693]
Coordinates
chr3:+:5454896..5459075
Molecular Weight (calculated)
43076.2 Da
IEP (calculated)
4.860
GRAVY (calculated)
-0.641
Length
381 amino acids
Sequence
(BLAST)
(BLAST)
001: MARFSVGREE DDNDEGPSNP TRRPEPKRRR TTAGTFSCSA VIRQQEEEEE ERERERERER VVEEEVEEDA EEEAEEEAED WGSESESEGN FRSSGDRRVP
101: VRESEVSREN RSISVEDPDQ NLEGSRGNGS ISVMLSDPDV LDCPICLEHL RVPIFQCENG HIACASCCTK IANKCPSCCW PIGYNRCRAM EKVVESVKVS
201: CVNKMYGCKE ILSYSKKTDH ENACIYVPCS CPSHGCDFIG TSTNVYAHFS DKHASSAEHI FFNAVHPIHI EKDQSYKILQ MRTEGILFII NHASDRVGSA
301: FNIICVGPSR QKRRFSYKLV VTDGESSFKL ESVAECIPNW SENSPLKKFL VVPRDVVNSS APLKLNVFIE EKEYVCNGCR C
101: VRESEVSREN RSISVEDPDQ NLEGSRGNGS ISVMLSDPDV LDCPICLEHL RVPIFQCENG HIACASCCTK IANKCPSCCW PIGYNRCRAM EKVVESVKVS
201: CVNKMYGCKE ILSYSKKTDH ENACIYVPCS CPSHGCDFIG TSTNVYAHFS DKHASSAEHI FFNAVHPIHI EKDQSYKILQ MRTEGILFII NHASDRVGSA
301: FNIICVGPSR QKRRFSYKLV VTDGESSFKL ESVAECIPNW SENSPLKKFL VVPRDVVNSS APLKLNVFIE EKEYVCNGCR C
001: MARFSVCGGD DGEGPSNNNH QSRKRQRLPS IDENEEDAET SDAGSSGEED EDETQNQGMR PESEDRGSTS DDSDREVVIE ERRFGKFVNS QSSSSSKDSP
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS
Arabidopsis Description
E3 ubiquitin-protein ligase SINA-like 10 [Source:UniProtKB/Swiss-Prot;Acc:Q84K34]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.