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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • extracellular 4
  • endoplasmic reticulum 3
  • vacuole 3
  • plasma membrane 3
  • golgi 3
  • mitochondrion 2
  • peroxisome 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:mitochondrion, peroxisome, plastid, secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:mitochondrion
Plant-mPloc:peroxisome
PProwler:mitochondrion
TargetP:secretory
WoLF PSORT:plastid
YLoc:extracellular
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400020128
PGSC0003DMT400023026
PGSC0003DMT400044692
PGSC0003DMT400044886
PGSC0003DMT400049429
PGSC0003DMT400051417
PGSC0003DMT400070848
PGSC0003DMT400095815

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G65940.1 PGSC0003DMT400051417 AT1G14830.1 21798944
AT5G65940.1 PGSC0003DMT400020128 AT2G42790.1 21798944
AT5G65940.1 PGSC0003DMT400044692 AT2G42790.1 21798944
AT5G65940.1 PGSC0003DMT400023026 AT3G12110.1 21798944
AT5G65940.1 PGSC0003DMT400049429 AT3G12110.1 21798944
AT5G65940.1 PGSC0003DMT400044886 AT5G56630.1 21798944
AT5G65940.1 PGSC0003DMT400070848 AT5G56630.1 21798944
AT5G65940.1 PGSC0003DMT400095815 AT5G56630.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400066409 Potato cytosol 53.79 51.08
PGSC0003DMT400000043 Potato cytosol, mitochondrion, peroxisome 66.67 33.08
PGSC0003DMT400066419 Potato cytosol 53.03 29.17
GSMUA_Achr5P13900_001 Banana cytosol 68.94 29.17
Solyc01g080930.2.1 Tomato cytosol 81.82 28.2
CDY45442 Canola mitochondrion 64.39 25.68
PGSC0003DMT400000054 Potato cytosol 74.24 25.52
Zm00001d007726_P001 Maize peroxisome 46.21 24.9
KRH07311 Soybean nucleus 71.97 24.55
VIT_09s0002g07160.t01 Wine grape mitochondrion, peroxisome, plastid 68.18 24.32
Zm00001d007732_P002 Maize extracellular 52.27 24.21
GSMUA_Achr8P14800_001 Banana cytosol 71.97 23.93
Bra018395.1-P Field mustard cytosol 66.67 23.59
AT5G65940.1 Thale cress peroxisome 67.42 23.55
GSMUA_Achr5P13870_001 Banana cytosol 69.7 23.29
AT2G30660.1 Thale cress peroxisome 66.67 23.28
TraesCS1D01G194800.2 Wheat cytosol 66.67 23.1
TraesCS1B01G206000.1 Wheat cytosol 66.67 23.1
Zm00001d023779_P001 Maize extracellular 67.42 23.06
CDY57769 Canola peroxisome 65.15 23.06
CDY55104 Canola cytosol 65.15 22.87
Bra031802.1-P Field mustard cytosol 65.15 22.87
Bra018392.1-P Field mustard cytosol 64.39 22.85
AT2G30650.1 Thale cress peroxisome 65.15 22.75
PGSC0003DMT400054311 Potato cytosol 27.27 22.64
TraesCS1A01G190800.1 Wheat plastid 66.67 22.45
CDY31775 Canola peroxisome 64.39 22.19
Bra039975.1-P Field mustard peroxisome 64.39 22.08
CDY62818 Canola peroxisome 65.91 21.7
PGSC0003DMT400066414 Potato cytosol 28.03 21.64
EER91893 Sorghum cytosol 62.88 21.5
Zm00001d007740_P001 Maize peroxisome 61.36 21.49
CDY31769 Canola peroxisome 65.15 21.45
CDX97894 Canola peroxisome 62.88 21.39
Bra039968.1-P Field mustard peroxisome 64.39 21.3
KXG29172 Sorghum peroxisome 62.12 21.19
Zm00001d021132_P004 Maize extracellular 64.39 21.04
CDY45439 Canola plastid 62.12 20.76
OQU84058 Sorghum mitochondrion 64.39 20.73
PGSC0003DMT400004585 Potato extracellular 41.67 20.6
HORVU1Hr1G049960.6 Barley mitochondrion 65.15 20.38
PGSC0003DMT400069137 Potato cytosol, mitochondrion 43.18 20.14
Zm00001d007728_P001 Maize cytosol 18.94 17.61
PGSC0003DMT400079108 Potato cytosol 44.7 17.15
PGSC0003DMT400065713 Potato cytosol, mitochondrion 31.06 17.08
PGSC0003DMT400004521 Potato cytosol 29.55 16.67
PGSC0003DMT400041136 Potato cytosol 43.18 16.43
PGSC0003DMT400020300 Potato cytosol 47.73 16.41
VIT_15s0045g01190.t01 Wine grape cytosol, nucleus, peroxisome 48.48 16.37
Os12t0264500-02 Rice endoplasmic reticulum 62.88 16.18
PGSC0003DMT400057075 Potato cytosol, plastid 44.7 14.75
Zm00001d007746_P002 Maize peroxisome 21.21 14.74
PGSC0003DMT400043000 Potato cytosol 10.61 7.18
PGSC0003DMT400066411 Potato nucleus 6.06 5.48
CDY71268 Canola cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole 5.3 4.7
GSMUA_Achr5P13890_001 Banana nucleus 5.3 4.38
PGSC0003DMT400066424 Potato cytosol, nucleus, plastid 1.52 2.94
Protein Annotations
EnsemblPlants:PGSC0003DMT400004567EnsemblPlantsGene:PGSC0003DMG400001814Gene3D:3.90.226.40GO:GO:0003674GO:GO:0003824GO:GO:0003860
GO:GO:0016787InterPro:ClpP/crotonase-like_dom_sfInterPro:HIBYL-CoA-HPANTHER:PTHR43176PFAM:PF16113PGSC:PGSC0003DMG400001814
SEG:segSUPFAM:SSF52096TMHMM:TMhelixUniParc:UPI0002959FABUniProt:M0ZNN0MapMan:50.3.1
Description
Peroxisomal 3-hydroxyisobutyryl-coenzyme A hydrolase [Source:PGSC_GENE;Acc:PGSC0003DMG400001814]
Coordinates
chr1:-:67765345..67767189
Molecular Weight (calculated)
14071.2 Da
IEP (calculated)
7.576
GRAVY (calculated)
0.308
Length
132 amino acids
Sequence
(BLAST)
001: MATYSKPQVF ILNGMVMGGG LVVSVHGRFR VATEKTVCAM PETALGIVPG ASHFYSRIPG FFGEYAGLTG ARLDGAEMLD VGLATHFVPS EKLPFLKQEL
101: AKVNTSDADV ISVIISLFST IPNLKAESPC HK
Best Arabidopsis Sequence Match ( AT2G30660.1 )
(BLAST)
001: MASQSQVLVE EKSSVRILTL NRPKQLNALC FNMISRLLQL FRAYEEDPSV KLVILKGQGR AFCAGGDVPP VVQNMVQGKW RLGADFFRDQ YTLNYVMATY
101: SKPQVSILNG IVMGAGAGVS IHGRFRIATE NTVFAMPETS LGLFPDVGAS YFLSRLPGFF GEYVGLTGAR LDGAELLACG LATHFVPSTR LTALETDLCK
201: VGSSDPSFVS TILDAYTQHP HLKQKSAYHR LDVIDRCFSK RTMEEIISAL ERETTQELDD WSLTTIRALK KSSPSSLKIS LRSIREGRLQ GVGHCLTREY
301: RMVCHVMKGD LSKDLVEGCR AILIDKDRNP KWEPRRLEDM KDSMVDQFFE RVEEEERWED LKLSPRNNLH ALRIAAKL
Arabidopsis Description
Probable 3-hydroxyisobutyryl-CoA hydrolase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q6NMB0]
SUBAcon: [peroxisome]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.