CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

nucleus 1
peroxisome 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	peroxisome
WoLF PSORT:	peroxisome
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31769	Canola	peroxisome	93.27	93.27
CDX97894	Canola	peroxisome	86.28	89.18
CDY31775	Canola	peroxisome	84.04	87.99
CDY57769	Canola	peroxisome	76.31	82.04
CDY55104	Canola	cytosol	76.81	81.91
AT2G30660.1	Thale cress	peroxisome	75.81	80.42
AT2G30650.1	Thale cress	peroxisome	72.57	76.98
CDY45442	Canola	mitochondrion	62.34	75.53
CDY45439	Canola	plastid	71.57	72.66
CDY71268	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	25.44	68.46
VIT_09s0002g07160.t01	Wine grape	mitochondrion, peroxisome, plastid	62.59	67.84
Solyc01g080930.2.1	Tomato	cytosol	63.34	66.32
PGSC0003DMT400004567	Potato	extracellular	21.7	65.91
PGSC0003DMT400066411	Potato	nucleus	23.94	65.75
Solyc01g108800.2.1	Tomato	cytoskeleton, cytosol, peroxisome	61.1	64.64
KRH07311	Soybean	nucleus	61.35	63.57
PGSC0003DMT400066409	Potato	cytosol	21.45	61.87
PGSC0003DMT400066424	Potato	cytosol, nucleus, plastid	10.47	61.76
PGSC0003DMT400000043	Potato	cytosol, mitochondrion, peroxisome	40.65	61.28
PGSC0003DMT400000054	Potato	cytosol	58.6	61.2
EER91893	Sorghum	cytosol	58.35	60.62
PGSC0003DMT400066419	Potato	cytosol	36.16	60.42
TraesCS1D01G194800.2	Wheat	cytosol	57.36	60.37
TraesCS1B01G206000.1	Wheat	cytosol	57.36	60.37
PGSC0003DMT400066414	Potato	cytosol	25.69	60.23
GSMUA_Achr5P13900_001	Banana	cytosol	46.63	59.94
Solyc01g094090.2.1	Tomato	cytosol	49.13	59.88
TraesCS1A01G190800.1	Wheat	plastid	57.11	58.42
Zm00001d007726_P001	Maize	peroxisome	35.66	58.37
GSMUA_Achr5P13870_001	Banana	cytosol	57.36	58.23
Zm00001d007746_P002	Maize	peroxisome	27.43	57.89
Zm00001d021132_P004	Maize	extracellular	57.86	57.43
PGSC0003DMT400004521	Potato	cytosol	32.92	56.41
Zm00001d023779_P001	Maize	extracellular	54.11	56.22
PGSC0003DMT400004585	Potato	extracellular	37.16	55.81
GSMUA_Achr8P14800_001	Banana	cytosol	55.11	55.67
OQU84058	Sorghum	mitochondrion	55.36	54.15
HORVU1Hr1G049960.6	Barley	mitochondrion	56.61	53.79
KXG29172	Sorghum	peroxisome	51.87	53.75
VIT_15s0045g01190.t01	Wine grape	cytosol, nucleus, peroxisome	47.38	48.59
Zm00001d007740_P001	Maize	peroxisome	45.64	48.54
Zm00001d007732_P002	Maize	extracellular	34.16	48.07
Zm00001d007728_P001	Maize	cytosol	16.21	45.77
Os12t0264500-02	Rice	endoplasmic reticulum	58.1	45.42
CDX67831	Canola	mitochondrion	42.14	42.04
CDX98420	Canola	mitochondrion	42.14	42.04
GSMUA_Achr5P13890_001	Banana	nucleus	15.96	40.0
CDY23311	Canola	mitochondrion	39.9	39.02
CDY39880	Canola	mitochondrion	39.9	39.02
CDX86518	Canola	cytosol	37.16	38.9
CDY49269	Canola	extracellular, mitochondrion, nucleus, plastid	21.7	38.67
CDY15584	Canola	cytosol	36.41	38.52
CDY72221	Canola	mitochondrion	19.7	37.98
CDY15581	Canola	cytosol	25.44	37.36
Solyc01g108790.1.1	Tomato	nucleus	15.96	36.36
CDY15583	Canola	cytosol	32.42	35.23
CDY64934	Canola	cytosol	32.92	34.65
CDX86519	Canola	extracellular	15.71	31.82
CDY01126	Canola	mitochondrion, plastid	32.67	31.04
CDX93011	Canola	plastid	32.42	30.73
CDX94817	Canola	mitochondrion, plastid	31.92	30.26

Protein Annotations

EnsemblPlants:CDY62818	EnsemblPlantsGene:GSBRNA2T00037633001	Gene3D:3.90.226.40	GO:A0A078JD76	GO:GO:0003674	GO:GO:0003824
GO:GO:0003860	GO:GO:0016787	InterPro:ClpP/crotonase-like_dom_sf	InterPro:HIBYL-CoA-H	PANTHER:PTHR43176	PFAM:PF16113
ProteinID:CDY62818	ProteinID:CDY62818.1	SUPFAM:SSF52096	UniParc:UPI0004EDD42F	UniProt:A0A078JD76	MapMan:50.3.1

Description

BnaC04g56390DBnaC04g56390D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JD76]

Coordinates

chrLK034198:+:17842..20464

Molecular Weight (calculated)

44578.1 Da

IEP (calculated)

9.071

GRAVY (calculated)

-0.142

Length

401 amino acids

Sequence
(BLAST)

001: MASEPHSQVL VEETSNVRIL TLNRPKQLNA LSLNMITRLL QLFLAYEEDP SVKLVILKGQ GRAFCAGGDV SAVVRDIRLG KWRRSADFMS LQYTLNYVMA
101: TYSKAQISIL NGIVMGGGAG VCVHGRFRIA TENTVFAMPE TALGLFPDVG ASYFLSRLPG FFGEYAGLTG ARLDGAEMLA CGLATHFVPS TRLTALGADL
201: CRVGSSDPVT FASTILDAYT QHPHPKQKSA CHRQIFNGNL CHQFLISIYF SLCRLDVIDK CFSRRTVEEI ISALERDATH KPDDWISATT GSLKKASPAS
301: LKISLRSIRE GRLQGLGQCL IRENRMVSHV MKGDISKDFV EGGRAILINK DRNPKWEPRR LEDMKDNMVD KYFKRVEEEE GWEDLKLPPR KHLPASAIAK
401: L

Best Arabidopsis Sequence Match ( AT5G65940.4 )
(BLAST)

001: MAVEMASQSQ VLVEEKSSVR ILTLNRPKQL NALSFHMISR LLQLFLAFEE DPSVKLVILK GHGRAFCAGG DVAAVVRDIN QGNWRLGANY FSSEYMLNYV
101: MATYSKAQVS ILNGIVMGGG AGVSVHGRFR IATENTVFAM PETALGLFPD VGASYFLSRL PGFFGEYVGL TGARLDGAEM LACGLATHFV PSTRLTALEA
201: DLCRINSNDP TFASTILDAY TQHPRLKQQS AYRRLDVIDR CFSRRTVEEI ISALEREATQ EADGWISATI QALKKGSPAS LKISLRSIRE GRLQGVGQCL
301: IREYRMVCHV MKGEISKDFV EGCRAILVDK DKNPKWEPRR LEDMKDSMVE QYFERVERED DLKLPPRNNL PALGIAKL

Arabidopsis Description

CHY13-hydroxyisobutyryl-CoA hydrolase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LKJ1]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.