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Maize
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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • peroxisome 2
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:cytosol, mitochondrion, peroxisome
MultiLoc:peroxisome
PProwler:mitochondrion
WoLF PSORT:peroxisome
YLoc:cytosol
 extracellular: 20408568
msms PMID: 20408568 doi
W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li
Department of Plant Nutrition, China Agricultural University, Beijing, PR China.
PPI

Inferred distinct locusB in Crop

locusBlocations
Zm00001d003309_P002
Zm00001d009716_P001
Zm00001d011373_P002
Zm00001d013426_P002
Zm00001d016081_P002
Zm00001d016248_P001
Zm00001d033751_P003
Zm00001d038775_P002
Zm00001d043563_P002
Zm00001d044191_P004
Zm00001d046072_P001
Zm00001d053382_P002

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G65940.1 Zm00001d013426_P002 AT1G14830.1 21798944
AT5G65940.1 Zm00001d033751_P003 AT1G14830.1 21798944
AT5G65940.1 Zm00001d003309_P002 AT2G42490.1 21798944
AT5G65940.1 Zm00001d016248_P001 AT2G42790.1 21798944
AT5G65940.1 Zm00001d009716_P001 AT4G01090.1 21798944
AT5G65940.1 Zm00001d011373_P002 AT4G01090.1 21798944
AT5G65940.1 Zm00001d016081_P002 AT4G01090.1 21798944
AT5G65940.1 Zm00001d044191_P004 AT4G01090.1 21798944
AT5G65940.1 Zm00001d046072_P001 AT4G01090.1 21798944
AT5G65940.1 Zm00001d053382_P002 AT4G01090.1 21798944
AT5G65940.1 Zm00001d038775_P002 AT5G56630.1 21798944
AT5G65940.1 Zm00001d043563_P002 AT5G56630.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d021132_P004 Maize extracellular 76.94 73.51
Zm00001d007726_P001 Maize peroxisome 46.37 73.06
TraesCS1B01G206000.1 Wheat cytosol 70.98 71.92
TraesCS1D01G194800.2 Wheat cytosol 70.73 71.65
TraesCS1A01G190800.1 Wheat plastid 71.76 70.66
Zm00001d007746_P002 Maize peroxisome 33.42 67.89
PGSC0003DMT400004567 Potato extracellular 23.06 67.42
HORVU1Hr1G049960.6 Barley mitochondrion 70.73 64.69
PGSC0003DMT400066409 Potato cytosol 22.28 61.87
CDY57769 Canola peroxisome 59.07 61.13
Zm00001d007740_P001 Maize peroxisome 59.33 60.74
Solyc01g080930.2.1 Tomato cytosol 60.1 60.57
Bra031802.1-P Field mustard cytosol 58.55 60.11
CDY55104 Canola cytosol 58.55 60.11
GSMUA_Achr5P13900_001 Banana cytosol 48.45 59.94
AT5G65940.1 Thale cress peroxisome 58.55 59.79
VIT_09s0002g07160.t01 Wine grape mitochondrion, peroxisome, plastid 56.74 59.19
AT2G30660.1 Thale cress peroxisome 57.77 58.99
Solyc01g094090.2.1 Tomato cytosol 50.0 58.66
Solyc01g108800.2.1 Tomato cytoskeleton, cytosol, peroxisome 57.51 58.58
KRH07311 Soybean nucleus 58.55 58.4
PGSC0003DMT400000043 Potato cytosol, mitochondrion, peroxisome 39.9 57.89
GSMUA_Achr5P13870_001 Banana cytosol 59.07 57.72
CDY45442 Canola mitochondrion 49.48 57.7
VIT_15s0045g01170.t01 Wine grape cytosol 21.76 57.53
AT2G30650.1 Thale cress peroxisome 56.22 57.41
PGSC0003DMT400000054 Potato cytosol 56.99 57.29
Bra018392.1-P Field mustard cytosol 55.18 57.26
GSMUA_Achr8P14800_001 Banana cytosol 58.81 57.18
CDY31775 Canola peroxisome 55.96 56.4
CDY71268 Canola cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole 21.76 56.38
PGSC0003DMT400066411 Potato nucleus 20.98 55.48
PGSC0003DMT400066419 Potato cytosol 34.46 55.42
Zm00001d007732_P002 Maize extracellular 40.67 55.09
PGSC0003DMT400066414 Potato cytosol 24.35 54.97
CDX97894 Canola peroxisome 54.92 54.64
Bra018395.1-P Field mustard cytosol 52.59 54.42
CDY62818 Canola peroxisome 56.22 54.11
Bra039975.1-P Field mustard peroxisome 53.89 54.03
Bra039968.1-P Field mustard peroxisome 55.44 53.63
CDY31769 Canola peroxisome 55.7 53.62
Os12t0264500-02 Rice endoplasmic reticulum 69.95 52.63
CDY45439 Canola plastid 53.11 51.9
PGSC0003DMT400004521 Potato cytosol 31.09 51.28
PGSC0003DMT400004585 Potato extracellular 35.23 50.94
Zm00001d007728_P001 Maize cytosol 18.65 50.7
PGSC0003DMT400066424 Potato cytosol, nucleus, plastid 8.55 48.53
VIT_15s0045g01190.t01 Wine grape cytosol, nucleus, peroxisome 44.82 44.25
Zm00001d029860_P001 Maize plasma membrane 43.26 41.13
Zm00001d043490_P001 Maize cytosol, extracellular 40.16 40.36
GSMUA_Achr5P13890_001 Banana nucleus 16.06 38.75
Solyc01g108790.1.1 Tomato nucleus 15.03 32.95
Zm00001d046456_P009 Maize plastid 28.76 24.83
Protein Annotations
EntrezGene:100283469Gene3D:3.90.226.40MapMan:4.2.7.4MapMan:4.2.7.6.1ProteinID:AQK40001.1UniProt:B4FIT7
EMBL:BT037025InterPro:ClpP/crotonase-like_dom_sfncoils:CoilGO:GO:0003674GO:GO:0003824GO:GO:0003860
GO:GO:0016787InterPro:HIBYL-CoA-HPFAM:PF16113PANTHER:PTHR43176PANTHER:PTHR43176:SF6SUPFAM:SSF52096
UniParc:UPI00017B6FE7EnsemblPlantsGene:Zm00001d023779EnsemblPlants:Zm00001d023779_P001EnsemblPlants:Zm00001d023779_T001::
Description
3-hydroxyisobutyryl-CoA hydrolase 1
Coordinates
chr10:+:19912191..19918189
Molecular Weight (calculated)
43303.2 Da
IEP (calculated)
8.041
GRAVY (calculated)
-0.190
Length
386 amino acids
Sequence
(BLAST)
001: MATLPREGAA AADSDQLLVE AHGSTRTLIL NRPKQLNALS SEMIKGLLWY FTAFEKDDGV RLLIMKGNRR VFCSGGDIAQ CARCLYNGNW KWVDDFFQNE
101: YLLNYIIATY IKPQVSILSG IVMGGGAGVS IHGRFRVATD NTIFAMPETA LGLFPDVGAS YFLSRLPGFY GEYVGLTGAR LDGAEMLACG LATHFVPSKR
201: LPLLEESLKK LDTSSTFAVS GIIDQFSQRP LVKDSSSLNR METINKCFSK RTVEEIIDAL EQEISNVSDK WVAATIKSLK KASPTSLKIS LRSIREGRTQ
301: TLGECLRREY RVVCHVLRGT FSRDLSEGFR AVLLEKDNKP EWIPPRLEQV PDEAVEQYFL RIDDPQWEDL NLPARLPHRR NIESKI
Best Arabidopsis Sequence Match ( AT5G65940.4 )
(BLAST)
001: MAVEMASQSQ VLVEEKSSVR ILTLNRPKQL NALSFHMISR LLQLFLAFEE DPSVKLVILK GHGRAFCAGG DVAAVVRDIN QGNWRLGANY FSSEYMLNYV
101: MATYSKAQVS ILNGIVMGGG AGVSVHGRFR IATENTVFAM PETALGLFPD VGASYFLSRL PGFFGEYVGL TGARLDGAEM LACGLATHFV PSTRLTALEA
201: DLCRINSNDP TFASTILDAY TQHPRLKQQS AYRRLDVIDR CFSRRTVEEI ISALEREATQ EADGWISATI QALKKGSPAS LKISLRSIRE GRLQGVGQCL
301: IREYRMVCHV MKGEISKDFV EGCRAILVDK DKNPKWEPRR LEDMKDSMVE QYFERVERED DLKLPPRNNL PALGIAKL
Arabidopsis Description
CHY13-hydroxyisobutyryl-CoA hydrolase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LKJ1]
SUBAcon: [peroxisome]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.