Factsheet for GSMUA_Achr5P13900_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
peroxisome 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, peroxisome, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	peroxisome
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr1P04940_001
GSMUA_Achr2P16600_001
GSMUA_Achr2P21630_001
GSMUA_Achr3P25070_001
GSMUA_Achr4P01040_001
GSMUA_Achr4P08240_001
GSMUA_Achr4P15420_001
GSMUA_Achr6P06650_001
GSMUA_Achr6P12170_001
GSMUA_Achr7P10770_001
GSMUA_Achr7P11190_001
GSMUA_Achr7P13640_001
GSMUA_Achr7P14150_001
GSMUA_Achr7P18630_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G65940.1	GSMUA_Achr2P21630_001	AT1G14830.1	21798944
AT5G65940.1	GSMUA_Achr7P11190_001	AT1G14830.1	21798944
AT5G65940.1	GSMUA_Achr10P...	AT2G42490.1	21798944
AT5G65940.1	GSMUA_Achr6P06650_001	AT2G42490.1	21798944
AT5G65940.1	GSMUA_Achr6P12170_001	AT2G42490.1	21798944
AT5G65940.1	GSMUA_Achr10P...	AT2G42790.1	21798944
AT5G65940.1	GSMUA_Achr10P...	AT3G12110.1	21798944
AT5G65940.1	GSMUA_Achr7P18630_001	AT3G12110.1	21798944
AT5G65940.1	GSMUA_AchrUn_...	AT3G12110.1	21798944
AT5G65940.1	GSMUA_Achr10P...	AT4G01090.1	21798944
AT5G65940.1	GSMUA_Achr10P...	AT4G01090.1	21798944
AT5G65940.1	GSMUA_Achr10P...	AT4G01090.1	21798944
AT5G65940.1	GSMUA_Achr3P25070_001	AT4G01090.1	21798944
AT5G65940.1	GSMUA_Achr7P14150_001	AT4G01090.1	21798944
AT5G65940.1	GSMUA_Achr1P04940_001	AT5G56630.1	21798944
AT5G65940.1	GSMUA_Achr2P16600_001	AT5G56630.1	21798944
AT5G65940.1	GSMUA_Achr4P01040_001	AT5G56630.1	21798944
AT5G65940.1	GSMUA_Achr4P08240_001	AT5G56630.1	21798944
AT5G65940.1	GSMUA_Achr4P15420_001	AT5G56630.1	21798944
AT5G65940.1	GSMUA_Achr7P10770_001	AT5G56630.1	21798944
AT5G65940.1	GSMUA_Achr7P13640_001	AT5G56630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400004567	Potato	extracellular	29.17	68.94
GSMUA_Achr5P13870_001	Banana	cytosol	85.9	67.85
VIT_15s0045g01170.t01	Wine grape	cytosol	29.81	63.7
PGSC0003DMT400066409	Potato	cytosol	28.21	63.31
GSMUA_Achr8P14800_001	Banana	cytosol	73.72	57.93
PGSC0003DMT400066419	Potato	cytosol	42.95	55.83
Solyc01g094090.2.1	Tomato	cytosol	58.33	55.32
EER91893	Sorghum	cytosol	65.06	52.59
TraesCS1B01G206000.1	Wheat	cytosol	64.1	52.49
AT5G65940.1	Thale cress	peroxisome	63.46	52.38
TraesCS1D01G194800.2	Wheat	cytosol	63.78	52.23
Solyc01g080930.2.1	Tomato	cytosol	64.1	52.22
AT2G30660.1	Thale cress	peroxisome	62.82	51.85
CDY57769	Canola	peroxisome	61.54	51.47
Bra018392.1-P	Field mustard	cytosol	60.9	51.08
CDY55104	Canola	cytosol	61.22	50.8
Bra031802.1-P	Field mustard	cytosol	61.22	50.8
TraesCS1A01G190800.1	Wheat	plastid	63.78	50.77
Zm00001d021132_P004	Maize	extracellular	65.71	50.74
Bra018395.1-P	Field mustard	cytosol	59.62	49.87
KRH07311	Soybean	nucleus	61.54	49.61
VIT_09s0002g07160.t01	Wine grape	mitochondrion, peroxisome, plastid	58.65	49.46
Solyc01g108800.2.1	Tomato	cytoskeleton, cytosol, peroxisome	58.97	48.55
PGSC0003DMT400000043	Potato	cytosol, mitochondrion, peroxisome	41.35	48.5
Zm00001d023779_P001	Maize	extracellular	59.94	48.45
AT2G30650.1	Thale cress	peroxisome	58.33	48.15
PGSC0003DMT400000054	Potato	cytosol	58.97	47.92
KXG29172	Sorghum	peroxisome	58.97	47.55
Bra039975.1-P	Field mustard	peroxisome	58.65	47.53
CDY31775	Canola	peroxisome	58.33	47.52
CDX97894	Canola	peroxisome	58.97	47.42
Zm00001d007728_P001	Maize	cytosol	21.47	47.18
HORVU1Hr1G049960.6	Barley	mitochondrion	63.78	47.16
CDY62818	Canola	peroxisome	59.94	46.63
OQU84058	Sorghum	mitochondrion	60.58	46.1
Zm00001d007740_P001	Maize	peroxisome	55.45	45.89
CDY31769	Canola	peroxisome	58.65	45.64
Bra039968.1-P	Field mustard	peroxisome	58.33	45.61
CDY45442	Canola	mitochondrion	47.44	44.71
CDY45439	Canola	plastid	55.77	44.05
Zm00001d007726_P001	Maize	peroxisome	34.29	43.67
GSMUA_Achr4P17080_001	Banana	mitochondrion	23.72	42.77
Os12t0264500-02	Rice	endoplasmic reticulum	64.74	39.38
Zm00001d007732_P002	Maize	extracellular	35.58	38.95
PGSC0003DMT400004585	Potato	extracellular	30.13	35.21
GSMUA_Achr4P27030_001	Banana	mitochondrion	45.19	34.81
Zm00001d007746_P002	Maize	peroxisome	20.51	33.68
PGSC0003DMT400004521	Potato	cytosol	24.68	32.91
PGSC0003DMT400066414	Potato	cytosol	17.63	32.16
VIT_15s0045g01190.t01	Wine grape	cytosol, nucleus, peroxisome	39.74	31.71
GSMUA_Achr4P30390_001	Banana	mitochondrion	43.91	31.21
GSMUA_Achr4P17090_001	Banana	cytosol, nucleus, peroxisome	18.59	28.71
CDY71268	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	13.46	28.19
GSMUA_Achr7P08560_001	Banana	cytosol	33.65	27.7
GSMUA_Achr6P00740_001	Banana	cytosol	33.01	27.32
GSMUA_Achr9P06670_001	Banana	plastid	41.03	27.12
GSMUA_Achr7P13260_001	Banana	cytosol	32.05	26.74
PGSC0003DMT400066411	Potato	nucleus	10.9	23.29
Solyc01g108790.1.1	Tomato	nucleus	8.97	15.91
GSMUA_Achr5P13890_001	Banana	nucleus	6.41	12.5
PGSC0003DMT400066424	Potato	cytosol, nucleus, plastid	0.32	1.47

Protein Annotations

EnsemblPlants:GSMUA_Achr5P13900_001	EnsemblPlants:GSMUA_Achr5T13900_001	EnsemblPlantsGene:GSMUA_Achr5G13900_001	Gene3D:3.90.226.40	GO:GO:0003674	GO:GO:0003824
GO:GO:0003860	GO:GO:0016787	InterPro:ClpP/crotonase-like_dom_sf	InterPro:HIBYL-CoA-H	PANTHER:PTHR43176	PANTHER:PTHR43176:SF6
PFAM:PF16113	SUPFAM:SSF52096	UniParc:UPI00029672B4	UniProt:M0SYB9	MapMan:4.2.7.4	:

Description

3-hydroxyisobutyryl-CoA hydrolase 1 [Source:GMGC_GENE;Acc:GSMUA_Achr5G13900_001]

Coordinates

chr5:-:9990578..10003331

Molecular Weight (calculated)

34294.7 Da

IEP (calculated)

5.736

GRAVY (calculated)

0.263

Length

312 amino acids

Sequence
(BLAST)

001: MASSSQNASN DGTTNQVLVE DCRFTRILTL NRPRQLNALS TPMIMKLLKL FVAYEKDSDV KLLIMKGNGR AFSAGGDVAA VVQSVTQGHW TLGAEFFRNE
101: YTLNYIIATY SKPQVSILDG IVMGGGAGIS IHGRFRVVTE KTVFAMPETA LGFFPDIGAS YFLSRLPGFF GEYVGLTGAR LDGAEMLACG LATHFVPSMN
201: LTYLEDLLTK VETSDPFVIC AIIDQFSKMV PLKVSSAYNR LDIIDKCFSK ETVEDIISAL EKESASMADE WIVVAIQELK KASPISLKIT LRSVWGFVHS
301: CFDPVIISFM FL

Best Arabidopsis Sequence Match ( AT5G65940.2 )
(BLAST)

001: MAVEMASQSQ VLVEEKSSVR ILTLNRPKQL NALSFHMISR LLQLFLAFEE DPSVKLVILK GHGRAFCAGG DVAAVVRDIN QGNWRLGANY FSSEYMLNYV
101: MATYSKAQVS ILNGIVMGGG AGVSVHGRFR IATENTVFAM PETALGLFPD VGASYFLSRL PGFFGEYVGL TGARLDGAEM LACGLATHFV PSTRLTALEA
201: DLCRINSNDP TFASTILDAY TQHPRLKQQS AYRRLDVIDR CFSRRTVEEI ISALEREATQ EADGWISATI QALKKGSPAS LKISLRSIRE GRLQGVGQCL
301: IREYRMVCHV MKGEISKDFV EVLQAFSI

Arabidopsis Description

CHY13-hydroxyisobutyryl-CoA hydrolase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LKJ1]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.