Factsheet for GSMUA_Achr6P12170_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

plastid 2
peroxisome 4
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr3P06220_001
GSMUA_Achr4P05600_001
GSMUA_Achr4P12250_001
GSMUA_Achr5P27350_001
GSMUA_Achr5P27360_001
GSMUA_Achr6P06650_001
GSMUA_Achr6P12170_001
GSMUA_Achr9P18410_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G42490.1	GSMUA_Achr3P06220_001	AT1G13520.1	21798944
AT2G42490.1	GSMUA_Achr5P27350_001	AT1G13520.1	21798944
AT2G42490.1	GSMUA_Achr5P27360_001	AT1G13520.1	21798944
AT2G42490.1	GSMUA_Achr9P18410_001	AT1G13520.1	21798944
AT2G42490.1	GSMUA_Achr10P...	AT2G42490.1	21798944
AT2G42490.1	GSMUA_Achr6P06650_001	AT2G42490.1	21798944
AT2G42490.1	GSMUA_Achr6P12170_001	AT2G42490.1	21798944
AT2G42490.1	GSMUA_Achr11P...	AT5G46570.1	21798944
AT2G42490.1	GSMUA_Achr4P05600_001	AT5G46570.1	21798944
AT2G42490.1	GSMUA_Achr4P12250_001	AT5G46570.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	peroxisome	80.82	91.54
GSMUA_Achr6P06650_001	Banana	peroxisome	76.71	88.25
Os04t0476100-01	Rice	peroxisome	55.92	86.68
KRH69629	Soybean	peroxisome	75.84	80.13
TraesCS6D01G191300.1	Wheat	peroxisome	75.09	80.08
VIT_00s0225g00090.t01	Wine grape	peroxisome	77.09	79.97
HORVU6Hr1G053060.2	Barley	peroxisome	74.35	79.92
TraesCS6B01G236300.4	Wheat	cytosol	64.76	79.88
Os02t0593100-00	Rice	cytosol	46.33	79.83
KRG99420	Soybean	plastid	75.84	79.71
TraesCS6A01G207600.3	Wheat	peroxisome	74.47	79.42
KRH45608	Soybean	mitochondrion	75.72	79.37
Os04t0136200-00	Rice	cytosol, peroxisome	60.52	79.28
HORVU2Hr1G082420.6	Barley	cytosol	58.28	79.19
OQU89852	Sorghum	cytosol	61.89	78.14
EES12364	Sorghum	peroxisome	75.97	78.01
TraesCS2A01G327600.1	Wheat	golgi	74.6	77.69
Zm00001d003309_P002	Maize	mitochondrion, peroxisome	75.34	77.56
TraesCS2D01G335300.1	Wheat	peroxisome, unclear	74.72	77.42
TraesCS2B01G354400.1	Wheat	peroxisome	74.6	77.39
KRH54329	Soybean	plastid	73.35	76.1
CDY47975	Canola	peroxisome	73.35	76.0
CDY14839	Canola	peroxisome, plastid	73.23	75.87
AT2G42490.1	Thale cress	peroxisome	73.1	75.64
Solyc05g013440.2.1	Tomato	peroxisome, plastid	72.98	75.52
VIT_17s0000g09100.t01	Wine grape	peroxisome	74.35	75.47
Bra016871.1-P	Field mustard	plastid	72.48	73.95
Solyc08g014330.2.1	Tomato	peroxisome, plastid	72.35	73.73
Solyc06g071700.1.1	Tomato	plastid	70.98	73.64
PGSC0003DMT400059626	Potato	peroxisome	71.86	73.41
PGSC0003DMT400069411	Potato	plastid	61.77	71.88
KRH74530	Soybean	cytosol	21.67	57.05
CDY35376	Canola	plastid	72.35	54.55
CDY22564	Canola	peroxisome, plastid	72.6	54.23
KRH03234	Soybean	nucleus	69.74	42.81
GSMUA_Achr8P15510_001	Banana	extracellular, golgi, vacuole	16.19	30.09
GSMUA_Achr9P11130_001	Banana	extracellular, vacuole	23.91	28.66
GSMUA_Achr8P03320_001	Banana	extracellular, golgi	22.79	27.03
GSMUA_Achr1P19790_001	Banana	extracellular, vacuole	23.04	26.7
GSMUA_Achr8P15520_001	Banana	cytosol, peroxisome, plastid	8.22	25.58
GSMUA_Achr8P19360_001	Banana	extracellular, golgi	7.97	19.45

Protein Annotations

KEGG:00260+1.4.3.21	KEGG:00350+1.4.3.21	KEGG:00360+1.4.3.21	KEGG:00410+1.4.3.21	KEGG:00950+1.4.3.21	KEGG:00960+1.4.3.21
Gene3D:2.70.98.20	Gene3D:3.10.450.40	MapMan:50.1.4	InterPro:Cu_amine_oxidase	InterPro:Cu_amine_oxidase_C	InterPro:Cu_amine_oxidase_C_sf
InterPro:Cu_amine_oxidase_N-reg	InterPro:Cu_amine_oxidase_N2	InterPro:Cu_amine_oxidase_N3	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005507	GO:GO:0008131	GO:GO:0008150	GO:GO:0008152	GO:GO:0009308	GO:GO:0016491
GO:GO:0046872	GO:GO:0048038	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr6G12170_001	EnsemblPlants:GSMUA_Achr6P12170_001	EnsemblPlants:GSMUA_Achr6T12170_001
InterPro:IPR036460	UniProt:M0T6B5	PFAM:PF01179	PFAM:PF02727	PFAM:PF02728	PANTHER:PTHR10638
PANTHER:PTHR10638:SF18	SUPFAM:SSF49998	SUPFAM:SSF54416	UniParc:UPI0002961AA4	SEG:seg	:

Description

Putative Primary amine oxidase [Source:GMGC_GENE;Acc:GSMUA_Achr6G12170_001]

Coordinates

chr6:+:8136208..8147655

Molecular Weight (calculated)

90168.4 Da

IEP (calculated)

7.886

GRAVY (calculated)

-0.282

Length

803 amino acids

Sequence
(BLAST)

001: MCCQCSCIKS TKNNDEKKRK SNIKTKNFSR KFALHYVSTV STLDSEKTES CLFPSLSLSL SLSLSYVVLC HIFDKDVEPA NKYGFGFAVH PPPPPNPIAL
101: PPIPIVMRAQ NSHPLDPLSA AEILVAVATV RAAGATPEVR DGMRFIEVVL LEPEKNVVAL ADAYFFPPFQ PSLLPRTKGG PVILGKLPPR RARLVVYNKR
201: SNETSIWIVE LSEVHAATRG GRHRGKVISS EVVPVVQPSM DAMEYAECEA AVKSHLPFIE AMRKRGVEDM DLVMVDSWCV GFYSDADGPN RRLARPLIFC
301: RTESDCPMEN GYARPVEGIH VLVDIQNNVI IEFEDRKLVP LPPADPLRNY TPGETRGGID RSDVKPLQIL QPEGPSFRVN GYFVQWQKWN FRIGFTPREG
401: LVIHSLAYVD GSRGRRPIAH RLSFVEMVVP HGDPNEPHYR KNAFDAGEDG LGKNAHSLKK GCDCLGYIKY FDAHFTNYTG GVETIENCVC LHEEDHGILW
501: KHQDWRTGLA EVRRSRRLSV SFICTVANYE YGFFWHFYQD GKIEAEVKIT GILSLGALGP GESRKYGTTI APGLYAPVHQ HFFVARMDMA VDCKPNEAFN
601: QVVEVNVKVE EPGLHNIHNN AFYAEEKLLR SELQAMRDCN PSSARHWIVR NTRTVNRTGQ PAGYKLMPGP NCLPLAGPEA KFFRRAAFLK HNLWVTSYKH
701: DEMYPGGEFP NQNPRINEGL ATWVKKNRSL EETNIVLWYV FGVTHIPRLE DWPVMPVERI GFMLMPHGFF NCSPSVDVPP SPSGAEEESV APKLVPSLLL
801: AKL

Best Arabidopsis Sequence Match ( AT2G42490.1 )
(BLAST)

001: MASASKKTSA CPHHGGSLPP PKLVSAAPDT VAVWSDADDQ RASKVSLESV IRPVDSFPDN TAKKPANKGI SVMPRTETKH PLDPLSAAEI SVAVATVRAA
101: GANPEVRDGM RFIEVASVEP DKQVVALADA YFFPPFQPSL LPRTKSGPVI PMKLPPRRAR LVVYNQKSNE TSVWIVALSE VHAVTRGGHH RGRVVSSQVI
201: PDVQPPMDAA EYAECEAIVK DFPPFIEAMK RRGIEDMDLV MVDPWCVGYH SEADAPSRRL AKPLIYCRTD SDSPMENGYA RPVEGIYVLV DMQNMVVIEF
301: EDRKFVPLPP PDPLRNYTPG ESRGGVDRSD VKPLQIIQPE GPSFRVRGYF VEWQKWNFRI GFTPREGLVI HSVAYVDGSR GRRPVAHRLS FVEMVVPYGD
401: PNEPHYRKNA FDAGEDGLGK NAHSLKKGCD CLGSIKYFDA HFTNFTGGVE TIENCVCLHE EDHGILWKHQ DWRTGLAEVR RSRRLTVSFL CTVANYEYGF
501: YWHFYQDGKI EAEVKLTGIL SLGALQPGET RKYGTTIAPG LYAPVHQHFF IARMDMSVDC KPAEAFNQVV EVNVRVDERG ENNVHNNAFY AEEKLLKSEA
601: VAMRDCDPLS ARHWIVRNTR TVNRTGQLTG YKLVPGSNCL PLARPEAKFL RRAAFLKHNL WVTRYAPDEK FPGGEFPNQN PRAGEGLATW VKQNRSLEES
701: DVVLWYVFGI THVPRLEDWP VMPVEHIGFT LMPHGFFNCS PAVDVPPNPC ELETKESEVK EVVAPKALQT GLLSKL

Arabidopsis Description

Amine oxidase [Source:UniProtKB/TrEMBL;Acc:Q8L866]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.