CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
plastid 5
peroxisome 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P06650_001	Banana	peroxisome	43.35	81.23
GSMUA_Achr10P...	Banana	peroxisome	43.65	80.54
Os04t0476100-01	Rice	peroxisome	31.5	79.54
KRG99420	Soybean	plastid	45.95	78.66
KRH54329	Soybean	plastid	46.41	78.42
KRH69629	Soybean	peroxisome	45.49	78.29
KRH45608	Soybean	mitochondrion	45.64	77.94
TraesCS6B01G236300.4	Wheat	cytosol	37.84	76.04
TraesCS6D01G191300.1	Wheat	peroxisome	43.5	75.56
VIT_17s0000g09100.t01	Wine grape	peroxisome	45.49	75.22
HORVU6Hr1G053060.2	Barley	peroxisome	42.89	75.1
TraesCS6A01G207600.3	Wheat	peroxisome	43.2	75.03
Os02t0593100-00	Rice	cytosol	26.61	74.68
HORVU2Hr1G082420.6	Barley	cytosol	33.18	73.43
TraesCS2A01G327600.1	Wheat	golgi	43.12	73.15
OQU89852	Sorghum	cytosol	35.47	72.96
TraesCS2D01G335300.1	Wheat	peroxisome, unclear	43.2	72.9
EES12364	Sorghum	peroxisome	43.58	72.89
TraesCS2B01G354400.1	Wheat	peroxisome	43.12	72.87
Solyc06g071700.1.1	Tomato	plastid	43.04	72.74
Os04t0136200-00	Rice	cytosol, peroxisome	34.02	72.59
PGSC0003DMT400059626	Potato	peroxisome	43.58	72.52
Solyc08g014330.2.1	Tomato	peroxisome, plastid	43.65	72.46
Zm00001d003309_P002	Maize	mitochondrion, peroxisome	43.2	72.44
PGSC0003DMT400069411	Potato	plastid	37.61	71.3
GSMUA_Achr6P12170_001	Banana	peroxisome	42.81	69.74
KRH74530	Soybean	cytosol	13.38	57.38
KRG91286	Soybean	nucleus	15.83	30.58
KRG91283	Soybean	extracellular	14.98	29.04
KRG91282	Soybean	extracellular	14.68	28.44
KRH70957	Soybean	extracellular, plasma membrane	14.6	28.21
KRH75095	Soybean	nucleus	14.37	27.98
KRH13980	Soybean	extracellular, golgi, vacuole	15.52	27.73
KRH32975	Soybean	extracellular, golgi, vacuole	15.52	27.66
KRH02147	Soybean	nucleus	13.84	26.85
KRG91287	Soybean	extracellular, golgi, vacuole	13.46	26.59
KRH35530	Soybean	extracellular, plasma membrane	13.61	25.65
KRH50986	Soybean	cytosol	4.36	25.0

Protein Annotations

KEGG:00260+1.4.3.21	KEGG:00350+1.4.3.21	KEGG:00360+1.4.3.21	KEGG:00410+1.4.3.21	KEGG:00950+1.4.3.21	KEGG:00960+1.4.3.21
Gene3D:1.25.10.10	Gene3D:2.70.98.20	Gene3D:3.10.450.40	MapMan:50.1.4	EMBL:ACUP02010339	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Armadillo	InterPro:Cu_amine_oxidase	InterPro:Cu_amine_oxidase_C	InterPro:Cu_amine_oxidase_C_sf	InterPro:Cu_amine_oxidase_N-reg
InterPro:Cu_amine_oxidase_N2	InterPro:Cu_amine_oxidase_N3	EnsemblPlantsGene:GLYMA_17G085500	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005507	GO:GO:0005515	GO:GO:0008131	GO:GO:0008150	GO:GO:0008152	GO:GO:0009308
GO:GO:0016491	GO:GO:0046872	GO:GO:0048038	GO:GO:0055114	InterPro:IPR000225	InterPro:IPR011989
InterPro:IPR036460	UniProt:K7MKM4	EnsemblPlants:KRH03234	ProteinID:KRH03234	ProteinID:KRH03234.1	PFAM:PF01179
PFAM:PF02727	PFAM:PF02728	PANTHER:PTHR10638	PANTHER:PTHR10638:SF18	SMART:SM00185	SUPFAM:SSF48371
SUPFAM:SSF49998	SUPFAM:SSF54416	UniParc:UPI000296C8AF	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr17:+:6589337..6601346

Molecular Weight (calculated)

145073.0 Da

IEP (calculated)

7.747

GRAVY (calculated)

-0.171

Length

1308 amino acids

Sequence
(BLAST)

0001: MALVLQKATP PPSVLAASTH ANKLPTPVIS EPSATHALPP KGISTMSRTQ SSHPLDPLSA AEISVAVATV RAAGATPELR DSIRFIEVVL LEPDKHVVAL
0101: ADAYFFSPFQ PSLLPRTKGG AVIPSNLPPR CARIVVYNKK TNETSIWIVE LSQVHAVTRR GHHRGKVISS QVVPDAQPPM DAMEYAECEA VVKDFPPFRE
0201: AMKKRGIEDM DLVMVDAWCV GYYNEADDPN RRLTKPLIFC RGESDSPMEN GYARPVEGIY VLVDMQNMLV IEFEDRKFVP LPPVDPLRRY THGETRGGFD
0301: RSDIKPLQII QLEGPSFRVD GSYVAWQKWN FRIGFTPREG LVIYSVAYID GSQGRRPVAH RLSFVEMVVP YGDPNEPHYR KNAFHAGENG LGKNAHSLKK
0401: GCDCLGYIKY FDAHFTNFTG GVETIENCVC LHEEDHGILW KHHDWRTGLA EVRRSRRLSV SFMCTVANYE YGFFWYFYQA IKLTGILSLG SLLPGEFRKY
0501: GTTIAPGLYA PVHQHFFVAR MNMTVDSKPG DALNQVVEIN VKVEEPGDNN VHNNAFYAEE TLLKSELEAM RDCNPLAARH WIVRNTRIGN RTGQLTGYKL
0601: VPGSNCLPLA GSEAKFLRRA AFLRHNLWVT PYSHDQMFPG GEFPNQNPRV SQGLATWVKQ NRSLEETDIV LWYVFGITQV PRLEDWPVMP VERIGFMLMP
0701: HGFFNCSPAV DPNPNPAPEE EKSLRDELLG PILLGERVIK LAQEAESPKV DCTELARKVQ VVCDNLRSVV RVVSGTQCVN ERPIRRIVGE VSKNIERTLA
0801: LIRKCKKHGG VLRQVFSMTT TADFRKVRSL LESSNGDLVW LLTILDSKDG TNVSLPPIAS NDPILAWVWT FTYTLQLGQP KDRAEAATEL GSLARDNDRT
0901: KFIILDEGGV MPLLKLLKEA SSPAAQVAAA NALVNITTNQ DRVVTFIVES HAVPIIVQVL GDSPMRVRVS VANLVSAMAE QHELAREEFV RANVARPLVS
1001: LLSMDMGTVL TDPVADRATS IHSLVLNLSN VGEANSDGSS RGSGQHRRDR EVESPELRNE VKVSCAKALW KLSNGCLSSC RKITETKGLL CLAKIIESES
1101: GELQLNCLMA VMEIAAVAES NADLRRAAFK RTAPAAKAVL DQLLRVVQEE SDPALRIPAI KAIGSLARNF SGKVPQVIGP LVAQLGNRDV DVASEAAIAL
1201: GKFVCPDNYN CVDHSKAILE LDGIPKLMSL LQINDRQQVH GLKLLCYLAL NVGNSRVLEQ ERALNTLERF ARPVQAQHPD LKDLFAKALH HLTLYQPGAQ
1301: LHRQPLGL

Best Arabidopsis Sequence Match ( AT3G26600.1 )
(BLAST)

001: MGEEESRIGD ELSILVLTAE RLRVAVDEAE SFKTECGEVG KQVDRLAQML RTLVRFVSSS SQQVYDRPIR RVIVDVKKNL ERGFALVRKC RRHNIIRRVC
101: TIINAADFRK VINLLESSNG DVKWILSVFD SDGDGSFGGG IVISLPPIAT NDPILPWVWS LVASIQMGKL VDKIDAANQL GSLAGDNDRN KKIIVDEGGV
201: SPLLRLLKES SSAEGQIAAA TALGLLACDE DKVRSIVNEL GVPIIVQVLG DSSVRVQIKV ATLVARMAEH DPVAQDEFAR QSVIKPLVTL LSLDVFVDDI
301: HLSKHNSIHS LVQMNKEVEK DPSSKLYRPL KSSKSNVYRD IGGSGSRTGN FKKERDNENP EVKHELKVNC AEALWMLARG NVANSRRITE TKGLLSLAKI
401: VEKEVGELQY NCLMTLMEIT AAAESSADLR RAAFKTNSPA AKAVIDQMLW IIKDVDSPIL KIPAIQSIGS LARTFPARET RMIKPLVEKL GSSNQEVAIT
501: AVISLQKFVC PENFLCAEHS KNIIEYGAIP LLMKLIRNVE QQMQLQCLAL LCYLSVNASN HQQLEQAKVL TVLEGAERLA GLQNMELREL VSKAIYQLSL
601: YNAGSHSQML SYVGP

Arabidopsis Description

ARO4Armadillo repeat only 4 [Source:UniProtKB/TrEMBL;Acc:Q38957]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.