CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, peroxisome, secretory
BaCelLo:	secretory
EpiLoc:	peroxisome
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

extracellular: 20458513
extracellular: 22945350
nucleus: 24385303
endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 22945350 doi

C Liao, F Hochholdinger, C Li

Key Laboratory of Plant-Soil Interactions, Ministry of Education, Center for Resources, Environment and Food Security, China Agricultural University, Beijing, China.

msms PMID: 24385303 doi

S Komatsu, S Hiraga, MZ Nouri

National Institute of Crop Science, National Agriculture and Food Research Organization, Kannondai 2-1-18, Tsukuba, 305-8518, Japan, skomatsu@affrc.go.jp.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 20458513 doi

S Komatsu, Y Kobayashi, K Nishizawa, Y Nanjo, K Furukawa

National Institute of Crop Science, Kannondai 2-1-18, Tsukuba, 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH50986	Soybean	cytosol	26.41	78.07
KRH75095	Soybean	nucleus	69.14	69.35
KRH70957	Soybean	extracellular, plasma membrane	69.44	69.13
KRG91282	Soybean	extracellular	59.5	59.41
KRG91283	Soybean	extracellular	58.31	58.22
VIT_00s1682g00010.t01	Wine grape	cytosol, peroxisome	8.75	57.84
KRG91286	Soybean	nucleus	57.27	57.02
KRG91287	Soybean	extracellular, golgi, vacuole	46.44	47.28
KRH35530	Soybean	extracellular, plasma membrane	45.85	44.52
KRH32975	Soybean	extracellular, golgi, vacuole	44.51	40.87
KRH13980	Soybean	extracellular, golgi, vacuole	44.36	40.85
KRG99420	Soybean	plastid	28.93	25.52
KRH45608	Soybean	mitochondrion	28.64	25.2
KRH69629	Soybean	peroxisome	28.34	25.13
KRH54329	Soybean	plastid	27.0	23.51
KRH74530	Soybean	cytosol	8.75	19.34
KRH03234	Soybean	nucleus	26.85	13.84

Protein Annotations

KEGG:00260+1.4.3.21	KEGG:00350+1.4.3.21	KEGG:00360+1.4.3.21	KEGG:00410+1.4.3.21	KEGG:00950+1.4.3.21	KEGG:00960+1.4.3.21
Gene3D:2.70.98.20	Gene3D:3.10.450.40	MapMan:8.5.1	EMBL:ACUP02010296	InterPro:Cu_amine_oxidase	InterPro:Cu_amine_oxidase_C
InterPro:Cu_amine_oxidase_C_sf	InterPro:Cu_amine_oxidase_N-reg	InterPro:Cu_amine_oxidase_N2	InterPro:Cu_amine_oxidase_N3	EnsemblPlantsGene:GLYMA_17G019300	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005507	GO:GO:0008131	GO:GO:0008150	GO:GO:0008152
GO:GO:0009308	GO:GO:0016491	GO:GO:0046872	GO:GO:0048038	GO:GO:0055114	UniProt:I1MRA7
InterPro:IPR036460	EnsemblPlants:KRH02147	ProteinID:KRH02147	ProteinID:KRH02147.1	PFAM:PF01179	PFAM:PF02727
PFAM:PF02728	ScanProsite:PS01164	PANTHER:PTHR10638	PANTHER:PTHR10638:SF36	SUPFAM:SSF49998	SUPFAM:SSF54416
SignalP:SignalP-noTM	UniParc:UPI00023D6351	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr17:+:1447243..1450323

Molecular Weight (calculated)

75827.5 Da

IEP (calculated)

6.681

GRAVY (calculated)

-0.205

Length

674 amino acids

Sequence
(BLAST)

001: MATSMVKLML FSALILLSLQ AVVSVTPLHF QHPLDPLTKQ EISLVQTIVQ NKYPSSSNRL SFHYIGLDEP EKDAILKWES IKPTVITVPR KALAIVIINS
101: QTHEILIDLK ARRIVSDNIH SGNGFPTLSV DEQVVAIELP LKYGPFIESV NKRGLNLSEV VCSTFTMGWF GETKDRRTVR VECFMKESSP NIWVRPISGL
201: TMVVDLELMK IVQYHDGGII PVPTADNTEY RFSHQNPPFG PRQHSLATHQ PQGPGFQING HSISWANWKF HIGFDPRAGI VISLASIYDL EKHKSRRVLY
301: KGYISELFVP YQDPTDDFYY KTFFDAGEFG FGLSTVSLVP NRDCPSNAQF LDTYVHAADG TPLLIKNAIC VFEQYGSIMW RHTETGIPNE SFEETRTEVN
401: LVVRTVVTVG NYDNIIDWEF KTSGSIKPSI ALSGILEIKG VDIKHKSEIK SDQHGILVSA NSIGVYHDHF YIYHLDLDID GVANSFEKTS LKTVRVTDGS
501: SKRKSYWTTE VETAKTENDA KIILGLSPGE LSVVNPNKKT SVGNDVGYRL IPAIPAHPLL TDDDYPQIRG AFTNFNVWVT PYNRTEKWAG GLYVDHSHGD
601: DTLAVWTKKN RDINNKDIVL WHVVGIHHVP AQEDFPIMPL LSTAFELRPT NFFERNPVLK TLSPPDVQWP GCPK

Best Arabidopsis Sequence Match ( AT1G31670.1 )
(BLAST)

001: MVNRDNSIVA LSFFMLFLLV LHLHFETTTA ARKPVRVFGP PSSIEWSPPS PPKDDFEWFE INIYKNIEQT AFRPTGQGPS QGIGHKDPPV FSSVFVIGSL
101: SFIPPPHPFD PLTEIELNLV RNIINERYPI GLEHRFTFQY VGLNEPDKSL VLSWVSSQYH NVKSPPRQAF VIARDHGKTR EIVVDFASQA IVSEKIHVGN
201: GYPMLTIDEQ QATSELVLKF KPFRDSIRRR GLNVSEVVVT TSTMGWFGEA KPERLIKKRP FYLNGSVNTY LRPIEGMTII VNLDQMKVTK FRDRFTSPLP
301: NAKGTEFRIS KLKPPFGPSL QNAVLFQSEG PGFKIDGHTN RWANWEFHMS FDVRAGLVIS LASIFDMDVN KYRQVLYKGH LSEIFVPYMD PSEDWYFRTF
401: FDCGEFGCGQ YAVSLEPYTD CPGNAAFMDG VFASQDGTPI KITNVMCIFE KYAGDIMWRH TEIEIPGLKV RPDVSLVVRM VTTVGNYDYI VDYEFKPSGS
501: IKIGVGLTGV LEVKPVKYVN TSEIKEDDIH GTIVADNTIG VNHDHFVTYR LDLDIDGTDN SFVRSELVTK RTPKSVNTPR KSYWTTKRLK AEELLVVNPS
601: RKTKHGNEVG YRLLHGPASE GPLLAQDDYP QIRAAFTNYN VWITPYNNTE VWASGLYADR SQGDDTLAVW SQRNRKIEKT DIVMWYTVGF HHVPCQEDFP
701: TMPTLFGGFE LRPTNFFEQN PDLKTKPIKL NTTPTCTARN D

Arabidopsis Description

SUBAcon: [plasma membrane,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.