CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 6
peroxisome 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG99420
KRH04312
KRH45608
KRH57593
KRH63067
KRH69629
KRH71091
KRH71102

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G42490.1	KRH63067	AT1G13520.1	21798944
AT2G42490.1	KRH71091	AT1G13520.1	21798944
AT2G42490.1	KRH71102	AT1G13520.1	21798944
AT2G42490.1	KRG99420	AT2G42490.1	21798944
AT2G42490.1	KRH45608	AT2G42490.1	21798944
AT2G42490.1	KRH69629	AT2G42490.1	21798944
AT2G42490.1	KRH04312	AT5G46570.1	21798944
AT2G42490.1	KRH57593	AT5G46570.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG99420	Soybean	plastid	97.0	97.25
KRH69629	Soybean	peroxisome	89.16	89.87
GSMUA_Achr6P06650_001	Banana	peroxisome	80.55	88.4
Os04t0476100-01	Rice	peroxisome	58.88	87.07
GSMUA_Achr10P...	Banana	peroxisome	79.63	86.04
Solyc05g013440.2.1	Tomato	peroxisome, plastid	83.16	82.09
AT2G42490.1	Thale cress	peroxisome	82.77	81.7
TraesCS6D01G191300.1	Wheat	peroxisome	79.37	80.74
KRH54329	Soybean	plastid	81.46	80.62
CDY14839	Canola	peroxisome, plastid	81.46	80.52
CDY47975	Canola	peroxisome	81.46	80.52
TraesCS6B01G236300.4	Wheat	cytosol	68.28	80.34
HORVU6Hr1G053060.2	Barley	peroxisome	78.33	80.32
Os02t0593100-00	Rice	cytosol	48.69	80.04
TraesCS6A01G207600.3	Wheat	peroxisome	78.59	79.95
TraesCS2A01G327600.1	Wheat	golgi	79.37	78.86
Bra016871.1-P	Field mustard	plastid	80.94	78.78
EES12364	Sorghum	peroxisome	80.42	78.77
TraesCS2D01G335300.1	Wheat	peroxisome, unclear	79.5	78.58
TraesCS2B01G354400.1	Wheat	peroxisome	79.37	78.55
Os04t0136200-00	Rice	cytosol, peroxisome	62.79	78.47
Zm00001d003309_P002	Maize	mitochondrion, peroxisome	79.9	78.46
HORVU2Hr1G082420.6	Barley	cytosol	60.31	78.17
OQU89852	Sorghum	cytosol	64.75	77.99
GSMUA_Achr6P12170_001	Banana	peroxisome	79.37	75.72
KRH74530	Soybean	cytosol	25.07	62.95
CDY35376	Canola	plastid	82.11	59.06
CDY22564	Canola	peroxisome, plastid	82.51	58.79
KRH03234	Soybean	nucleus	77.94	45.64
KRG91286	Soybean	nucleus	27.81	31.46
KRG91283	Soybean	extracellular	26.24	29.78
KRG91282	Soybean	extracellular	25.72	29.19
KRH32975	Soybean	extracellular, golgi, vacuole	27.94	29.16
KRH13980	Soybean	extracellular, golgi, vacuole	27.68	28.96
KRH70957	Soybean	extracellular, plasma membrane	25.59	28.95
KRH75095	Soybean	nucleus	25.2	28.72
KRH02147	Soybean	nucleus	25.2	28.64
KRG91287	Soybean	extracellular, golgi, vacuole	23.11	26.74
KRH50986	Soybean	cytosol	7.83	26.32
KRH35530	Soybean	extracellular, plasma membrane	23.11	25.5

Protein Annotations

KEGG:00260+1.4.3.21	KEGG:00350+1.4.3.21	KEGG:00360+1.4.3.21	KEGG:00410+1.4.3.21	KEGG:00950+1.4.3.21	KEGG:00960+1.4.3.21
Gene3D:2.70.98.20	Gene3D:3.10.450.40	MapMan:50.1.4	EntrezGene:547524	EMBL:ACUP02005271	InterPro:Cu_amine_oxidase
InterPro:Cu_amine_oxidase_C	InterPro:Cu_amine_oxidase_C_sf	InterPro:Cu_amine_oxidase_N-reg	InterPro:Cu_amine_oxidase_N2	InterPro:Cu_amine_oxidase_N3	EnsemblPlantsGene:GLYMA_08G282800
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005507	GO:GO:0008131	GO:GO:0008150
GO:GO:0008152	GO:GO:0009308	GO:GO:0016491	GO:GO:0046872	GO:GO:0048038	GO:GO:0055114
UniProt:I1KXB5	InterPro:IPR036460	EnsemblPlants:KRH45608	ProteinID:KRH45608	ProteinID:KRH45608.1	PFAM:PF01179
PFAM:PF02727	PFAM:PF02728	PANTHER:PTHR10638	PANTHER:PTHR10638:SF18	SUPFAM:SSF49998	SUPFAM:SSF54416
UniParc:UPI00023CA6A7	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:38862402..38870925

Molecular Weight (calculated)

85457.0 Da

IEP (calculated)

7.051

GRAVY (calculated)

-0.372

Length

766 amino acids

Sequence
(BLAST)

001: MATAQEKTTP CCATQNNNKV ALAAPPTSSS SAPQQQSQSQ QRPSVATFIS AIDSPPKTAS AKGITVMVRA QTSHPLDPLT AAEISVAVAT VRAAGATPEV
101: RDGMRFIEVD LVEPEKQVVA LADAYFFPPF QPSLLPRTKG GPVIPTKLPP RKARLVVYNK KSNETSTWIV ELREVHATTR GGHHRGKVIS STVVPDVQPP
201: MDAVEYAECE AVVKDFPPFR EAMKKRGIED MDLVMVDPWC AGYHSEADAP SRRLAKPLIF CRTESDCPME NGYARPVEGI HVLVDMQNMV VLEFEDRKLV
301: PLPPADPLRN YTSGETQGGV DRSDVKPLQI IQPEGPSFRV NGHFIEWQKW NFRIGFTPRE GLVIHSVAYI DGSRGRRPVA HRLSFVEMVV PYGDPNDPHY
401: RKNAFDAGED GLGKNSHSLK KGCDCLGYIK YFDAHFTNFY GGVETIENCV CLHEEDHGIL WKHQDWRTGL AEVRRSRRLT VSFICTVANY EYGFFWHFYQ
501: DGKIEAEVKL TGILSLGALQ PGETRKYGTT IAPGLYAPVH QHFFVARMDM AVDCKPGEAF NQVVEVNVKV EKPGDNNVHN NAFYAEEKLL KSEMEAMRDC
601: DPLSARHWIV RNTRTVNRTG HLTGYKLVPG SNCLPLAGSE AKFLRRAAFL KHNLWVTPYA RDEMHPGGEF PNQNPRVGEG LATWVKQNRS LEEADIVLWY
701: VFGVTHIPRL EDWPVMPVER IGFMLMPHGF FNCSPAVDVP PNQSDLDDKE NGLPAKPIQN GLIAKL

Best Arabidopsis Sequence Match ( AT2G42490.1 )
(BLAST)

001: MASASKKTSA CPHHGGSLPP PKLVSAAPDT VAVWSDADDQ RASKVSLESV IRPVDSFPDN TAKKPANKGI SVMPRTETKH PLDPLSAAEI SVAVATVRAA
101: GANPEVRDGM RFIEVASVEP DKQVVALADA YFFPPFQPSL LPRTKSGPVI PMKLPPRRAR LVVYNQKSNE TSVWIVALSE VHAVTRGGHH RGRVVSSQVI
201: PDVQPPMDAA EYAECEAIVK DFPPFIEAMK RRGIEDMDLV MVDPWCVGYH SEADAPSRRL AKPLIYCRTD SDSPMENGYA RPVEGIYVLV DMQNMVVIEF
301: EDRKFVPLPP PDPLRNYTPG ESRGGVDRSD VKPLQIIQPE GPSFRVRGYF VEWQKWNFRI GFTPREGLVI HSVAYVDGSR GRRPVAHRLS FVEMVVPYGD
401: PNEPHYRKNA FDAGEDGLGK NAHSLKKGCD CLGSIKYFDA HFTNFTGGVE TIENCVCLHE EDHGILWKHQ DWRTGLAEVR RSRRLTVSFL CTVANYEYGF
501: YWHFYQDGKI EAEVKLTGIL SLGALQPGET RKYGTTIAPG LYAPVHQHFF IARMDMSVDC KPAEAFNQVV EVNVRVDERG ENNVHNNAFY AEEKLLKSEA
601: VAMRDCDPLS ARHWIVRNTR TVNRTGQLTG YKLVPGSNCL PLARPEAKFL RRAAFLKHNL WVTRYAPDEK FPGGEFPNQN PRAGEGLATW VKQNRSLEES
701: DVVLWYVFGI THVPRLEDWP VMPVEHIGFT LMPHGFFNCS PAVDVPPNPC ELETKESEVK EVVAPKALQT GLLSKL

Arabidopsis Description

Amine oxidase [Source:UniProtKB/TrEMBL;Acc:Q8L866]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.