CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi, nucleus, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2
mitochondrion 3
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, mitochondrion, nucleus
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98876
KRH14452
KRH23958
KRH39841
KRH46090
KRH73702

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13520.1	KRG98876	AT2G42790.1	21798944
AT1G13520.1	KRH14452	AT2G42790.1	21798944
AT1G13520.1	KRH46090	AT2G42790.1	21798944
AT1G13520.1	KRH73702	AT2G42790.1	21798944
AT1G13520.1	KRH23958	AT4G25200.1	21798944
AT1G13520.1	KRH39841	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH71091	Soybean	cytosol	84.27	71.72
KRH71102	Soybean	cytosol	49.55	43.72
VIT_01s0011g02320.t01	Wine grape	cytosol	50.45	43.48
VIT_01s0011g02330.t01	Wine grape	cytosol, mitochondrion	50.45	43.04
PGSC0003DMT400019462	Potato	cytosol	47.48	40.51
AT1G13530.1	Thale cress	cytosol	43.32	37.92
PGSC0003DMT400059315	Potato	cytosol	31.16	37.63
Bra026901.1-P	Field mustard	cytosol	42.43	37.63
AT1G13480.1	Thale cress	nucleus	43.03	37.47
CDY16094	Canola	cytosol	42.14	37.37
Solyc05g010460.2.1	Tomato	cytosol, nucleus, peroxisome	43.92	37.28
CDY26654	Canola	cytosol	41.84	37.11
AT1G13500.1	Thale cress	cytosol	42.43	37.05
CDX98103	Canola	cytosol	40.65	37.03
PGSC0003DMT400019458	Potato	cytosol	36.8	36.69
AT1G13470.1	Thale cress	cytosol	41.25	36.68
CDY50165	Canola	cytosol	41.54	36.55
Bra016728.1-P	Field mustard	cytosol	41.84	36.53
AT1G13520.1	Thale cress	cytosol	41.84	36.43
AT1G13510.1	Thale cress	cytosol	40.95	36.32
CDY26653	Canola	cytosol	38.28	36.24
AT1G13540.1	Thale cress	cytosol	40.95	36.22
Bra019719.1-P	Field mustard	cytosol	40.95	36.22
Bra016727.1-P	Field mustard	cytosol	41.54	36.08
CDY21100	Canola	cytosol	41.25	36.01
CDY21099	Canola	cytosol	40.95	35.94
Solyc05g010470.2.1	Tomato	cytosol	33.53	35.76
AT1G13490.2	Thale cress	cytosol	40.36	35.6
CDY50164	Canola	cytosol	40.95	35.57
CDY21101	Canola	cytosol, mitochondrion	40.95	35.57
Bra026902.1-P	Field mustard	cytosol	40.06	35.53
CDY30029	Canola	cytosol	40.06	35.43
AT1G13550.1	Thale cress	cytosol	38.87	33.76
CDY50167	Canola	cytosol	37.98	33.07
KRG93807	Soybean	mitochondrion, nucleus	39.76	33.0
CDY16095	Canola	cytosol	38.28	32.82
GSMUA_Achr5P27350_001	Banana	mitochondrion	37.69	32.73
GSMUA_Achr5P27360_001	Banana	mitochondrion	37.09	32.55
Bra026900.1-P	Field mustard	cytosol	37.69	32.4
CDY26655	Canola	cytosol	37.69	32.4
CDY16092	Canola	cytosol	27.0	32.04
GSMUA_Achr9P18410_001	Banana	cytosol	34.72	30.63
Os08t0413100-00	Rice	cytosol, plasma membrane	37.39	30.36
GSMUA_Achr3P06220_001	Banana	cytosol	34.42	30.29
Os08t0413200-00	Rice	cytosol	37.09	29.69
CDY16093	Canola	cytosol	28.49	27.91
Os08t0413500-00	Rice	cytosol, plasma membrane	33.53	27.76
TraesCS7D01G441700.1	Wheat	cytosol	36.8	27.19
EES09009	Sorghum	cytosol	34.72	26.41
Zm00001d050302_P001	Maize	cytosol, plastid	29.08	26.13
Os08t0412700-01	Rice	cytosol, plasma membrane	28.78	25.66
OQU80420	Sorghum	cytosol	27.6	25.07
TraesCS4B01G190200.1	Wheat	cytosol	28.49	24.24
TraesCS4D01G191600.1	Wheat	cytosol	28.19	24.17
TraesCS4A01G113900.1	Wheat	cytosol	27.89	23.98
Os08t0412800-01	Rice	plasma membrane	25.82	22.6

Protein Annotations

EMBL:ACUP02002596	EnsemblPlants:KRH63067	EnsemblPlantsGene:GLYMA_04G152900	InterPro:DUF1262	PANTHER:PTHR31050	PANTHER:PTHR31050:SF2
PFAM:PF06880	ProteinID:KRH63067	ProteinID:KRH63067.1	SEG:seg	UniParc:UPI00023C02B8	UniProt:A0A0R0KF86
MapMan:35.2	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:34616267..34617563

Molecular Weight (calculated)

38968.7 Da

IEP (calculated)

9.208

GRAVY (calculated)

-0.486

Length

337 amino acids

Sequence
(BLAST)

001: MYVTRPLSLY KKSANGLPLP PPEGPNSGIL VIQDQDLEPT SCFGLGEEYH EVKELPFPQN LNLELFYRSG ISLNRTTHHH HVAFIPVLNQ PLPSNKYYVI
101: NLSGKKRGEP SKVDTLQGLS RRWKVSASTS SDYSLRQASG VSEALRAIKP EFKFSLAKKS SESVVVGKWY CPFMFIKEGT HKTWKEEMRK SMFYEMTLEQ
201: KWEQIFSSEN EYGMQNTVNV DAVVQKEVVI IAGWEAVINE MNMWFKRKCF NNVGEKSSVG LSTAVVERMK WEQERVGWNG EEKQIRVKKV EEFKCTNGWK
301: KFGCRVFVET FVLKTLEGSI VLTYAFRHHD QLWSKWE

Best Arabidopsis Sequence Match ( AT1G13530.1 )
(BLAST)

001: MYVTKRLSEY QRNPSELTFL PTEGPNSGVL VIQDEESQPT CCFGKCFGCD LNGLPFPQNT RVTVKYQIGH GDDRIVLLDS VAFIPVLHQP PSSNLYYVIR
101: RRGKHAGEAC VSAKEEDKVS CCLCFTYVSN ATPRLLDPFD IYQQFEIHQR GSSTRKFFAT SVASDGIPPR FLRRKGWTVP FSASQDYGLI DDAKGVVDAK
201: LRYELPDFGK SVVVGKWYVP FLFVKEGDAK DQMKKSMYYS MTLHQRFEEV FFCENVDNKN CEVIVDVEVE TEVVKLEGEN IGRETKGVNS DGVVWFGVSE
301: TQKIGIGSVV LERMKWEEER FGWSKKGNEL KSSIKRTEKF EGGGPQWKSY RCYVLVETFE LKKTDGSLVL TYEFRHVDKL KSKWD

Arabidopsis Description

Protein of unknown function (DUF1262) [Source:TAIR;Acc:AT1G13530]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.