Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 2
- plastid 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0232400-01 | |
| Os02t0758000-01 | |
| Os06t0219500-00 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G13520.1 | Os02t0232400-01 | AT2G42790.1 | 21798944 |
| AT1G13520.1 | Os02t0758000-01 | AT4G25200.1 | 21798944 |
| AT1G13520.1 | Os06t0219500-00 | AT4G25200.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os08t0413100-00 | Rice | cytosol, plasma membrane | 75.06 | 76.14 |
| Os08t0413500-00 | Rice | cytosol, plasma membrane | 64.13 | 66.34 |
| EES09009 | Sorghum | cytosol | 55.34 | 52.6 |
| TraesCS7D01G441700.1 | Wheat | cytosol | 52.97 | 48.9 |
| GSMUA_Achr5P27350_001 | Banana | mitochondrion | 40.62 | 44.07 |
| GSMUA_Achr5P27360_001 | Banana | mitochondrion | 39.91 | 43.75 |
| KRH71102 | Soybean | cytosol | 37.53 | 41.36 |
| VIT_01s0011g02330.t01 | Wine grape | cytosol, mitochondrion | 37.77 | 40.25 |
| Os08t0412700-01 | Rice | cytosol, plasma membrane | 36.1 | 40.21 |
| CDY50165 | Canola | cytosol | 36.58 | 40.21 |
| CDY21100 | Canola | cytosol | 36.82 | 40.16 |
| CDY26654 | Canola | cytosol | 36.1 | 40.0 |
| Os08t0412800-01 | Rice | plasma membrane | 36.58 | 40.0 |
| CDY16094 | Canola | cytosol | 36.1 | 40.0 |
| Bra026901.1-P | Field mustard | cytosol | 36.1 | 40.0 |
| CDX98103 | Canola | cytosol | 35.15 | 40.0 |
| GSMUA_Achr3P06220_001 | Banana | cytosol | 36.34 | 39.95 |
| VIT_01s0011g02320.t01 | Wine grape | cytosol | 37.05 | 39.9 |
| CDY30029 | Canola | cytosol | 36.1 | 39.9 |
| AT1G13540.1 | Thale cress | cytosol | 36.1 | 39.9 |
| CDY16092 | Canola | cytosol | 26.84 | 39.79 |
| AT1G13530.1 | Thale cress | cytosol | 36.34 | 39.74 |
| Bra019719.1-P | Field mustard | cytosol | 35.87 | 39.63 |
| Bra026902.1-P | Field mustard | cytosol | 35.63 | 39.47 |
| AT1G13490.2 | Thale cress | cytosol | 35.63 | 39.27 |
| Solyc05g010470.2.1 | Tomato | cytosol | 29.45 | 39.24 |
| CDY21099 | Canola | cytosol | 35.63 | 39.06 |
| CDY26653 | Canola | cytosol | 33.02 | 39.04 |
| CDY50167 | Canola | cytosol | 35.87 | 39.02 |
| AT1G13480.1 | Thale cress | nucleus | 35.87 | 39.02 |
| PGSC0003DMT400019462 | Potato | cytosol | 36.58 | 38.99 |
| Bra016728.1-P | Field mustard | cytosol | 35.63 | 38.86 |
| KRH71091 | Soybean | cytosol | 36.34 | 38.64 |
| AT1G13520.1 | Thale cress | cytosol | 35.39 | 38.5 |
| GSMUA_Achr9P18410_001 | Banana | cytosol | 34.92 | 38.48 |
| AT1G13500.1 | Thale cress | cytosol | 35.15 | 38.34 |
| AT1G13510.1 | Thale cress | cytosol | 34.2 | 37.89 |
| AT1G13470.1 | Thale cress | cytosol | 33.97 | 37.73 |
| Solyc05g010460.2.1 | Tomato | cytosol, nucleus, peroxisome | 35.15 | 37.28 |
| PGSC0003DMT400059315 | Potato | cytosol | 24.7 | 37.28 |
| KRG93807 | Soybean | mitochondrion, nucleus | 35.87 | 37.19 |
| Bra016727.1-P | Field mustard | cytosol | 34.2 | 37.11 |
| AT1G13550.1 | Thale cress | cytosol | 34.2 | 37.11 |
| CDY50164 | Canola | cytosol | 34.2 | 37.11 |
| KRH63067 | Soybean | cytosol, golgi, mitochondrion, nucleus | 29.69 | 37.09 |
| PGSC0003DMT400019458 | Potato | cytosol | 29.45 | 36.69 |
| CDY21101 | Canola | cytosol, mitochondrion | 33.73 | 36.6 |
| PGSC0003DMT400026205 | Potato | mitochondrion | 33.49 | 35.43 |
| Solyc02g089650.2.1 | Tomato | mitochondrion | 33.25 | 35.18 |
| CDY15029 | Canola | cytosol, mitochondrion | 35.15 | 34.91 |
| AT1G61600.1 | Thale cress | cytosol | 34.44 | 34.44 |
| CDY16095 | Canola | cytosol | 31.12 | 33.33 |
| Bra026900.1-P | Field mustard | cytosol | 30.64 | 32.91 |
| CDY26655 | Canola | cytosol | 30.64 | 32.91 |
| Bra038594.1-P | Field mustard | nucleus | 33.73 | 30.15 |
| CDY26357 | Canola | mitochondrion | 33.73 | 30.15 |
| CDY47587 | Canola | nucleus | 13.06 | 30.05 |
| CDY48822 | Canola | cytosol | 14.96 | 30.0 |
| CDY16093 | Canola | cytosol | 23.99 | 29.36 |
Protein Annotations
| EnsemblPlants:Os08t0413200-00 | EnsemblPlantsGene:Os08g0413200 | EntrezGene:107275960 | InterPro:DUF1262 | PANTHER:PTHR31050 | PANTHER:PTHR31050:SF3 |
| PFAM:PF06880 | ProteinID:BAT05419.1 | RefSeq:XP_015649075.1 | SEG:seg | UniParc:UPI000393B984 | UniProt:A0A0P0XFR2 |
| MapMan:35.2 | : | : | : | : | : |
Description
Protein of unknown function DUF1262 domain containing protein. (Os08t0413200-00)
Coordinates
chr8:-:19766166..19767472
Molecular Weight (calculated)
46644.2 Da
IEP (calculated)
7.262
GRAVY (calculated)
-0.396
Length
421 amino acids
Sequence
(BLAST)
(BLAST)
001: MYVTRPMSRY QDNPQAAAEP PPDGPGSGIL VVEDEAAVER ATRWWGLWLD RQVYGLPFPQ SRKLKVEYAT ARMDGGGRAG TTHRTHTHTD RDDVVFVPVV
101: GQPLSSGRYY AVRATGRHAG KVSACSREED VVTCCGLWSF ANDASPRPFV RGDVYQQVEV VQLSRRGGFR AVAVAPDGVP PGYLRRKGWK VHTSASTSCN
201: LTDTAHGTDW PLRRRMPDLE SFDVGVGGST PVVVGRWYCP FMFIKDGGEQ WLKDQVKRCM FYKMTLEQSW EEIYSCDNTH RGSISSRLDE VEVSVTVRRS
301: TALLGGAGAV QGGAPQVFDG VMWFLPAASP AAAAGGGGGL GLDMVVWEKM EWELEKGGWV AGNGDDVERI KRVERHDGLG GHWDKFGCYL LVERFVLTRM
401: DGSVALTYEF RHTDKITTKW E
101: GQPLSSGRYY AVRATGRHAG KVSACSREED VVTCCGLWSF ANDASPRPFV RGDVYQQVEV VQLSRRGGFR AVAVAPDGVP PGYLRRKGWK VHTSASTSCN
201: LTDTAHGTDW PLRRRMPDLE SFDVGVGGST PVVVGRWYCP FMFIKDGGEQ WLKDQVKRCM FYKMTLEQSW EEIYSCDNTH RGSISSRLDE VEVSVTVRRS
301: TALLGGAGAV QGGAPQVFDG VMWFLPAASP AAAAGGGGGL GLDMVVWEKM EWELEKGGWV AGNGDDVERI KRVERHDGLG GHWDKFGCYL LVERFVLTRM
401: DGSVALTYEF RHTDKITTKW E
001: MYVTRRLSEY QKKPSELKLL PPEGPNSGIM VIQDEESQAT CCFGSCYEGR LKGLPFPQNV KLNAAYTSGG GEHQTTHLTP VVFIPVLDQP LSSNLYYVLQ
101: RRGKHTGKAS ASATEEERVS SCFCFSYIPD AKPQEADPYD IYQQFEIHQR RSSSRYYSAT SVASDGVPPN YLKRKDWWVS YSTSHDFGLR DDAKGINTKL
201: RLDSELTSLG KSIEIGKWYV PFIFVMEGDV KDQMNKSTFY SVTLQQRWEE VFFCENIGNE HFEVVVDVDV ETESVKLEGQ ETNLREDSGD GVVWFSVLRD
301: EKDDKKIGLG SVVVERMKWE EERFGWLNEA GERSNIKRSE RFEGGSSHWK SYRCYVLIES FELTRMDGSL VLTYEFRHVD KLKSKWD
101: RRGKHTGKAS ASATEEERVS SCFCFSYIPD AKPQEADPYD IYQQFEIHQR RSSSRYYSAT SVASDGVPPN YLKRKDWWVS YSTSHDFGLR DDAKGINTKL
201: RLDSELTSLG KSIEIGKWYV PFIFVMEGDV KDQMNKSTFY SVTLQQRWEE VFFCENIGNE HFEVVVDVDV ETESVKLEGQ ETNLREDSGD GVVWFSVLRD
301: EKDDKKIGLG SVVVERMKWE EERFGWLNEA GERSNIKRSE RFEGGSSHWK SYRCYVLIES FELTRMDGSL VLTYEFRHVD KLKSKWD
Arabidopsis Description
At1g13480 [Source:UniProtKB/TrEMBL;Acc:Q56Y29]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.